LOCUS       NM_001099632            1446 bp    mRNA    linear   ROD 16-FEB-2025
DEFINITION  Mus musculus ring finger protein 39 (Rnf39), mRNA.
ACCESSION   NM_001099632
VERSION     NM_001099632.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Wang,W., Li,Q., Jia,M., Wang,C., Liang,W., Liu,Y., Kong,H., Qin,Y.,
            Zhao,C., Zhao,W. and Song,H.
  TITLE     RNF39 facilitates antiviral immune responses by promoting
            K63-linked ubiquitination of STING
  JOURNAL   Int Immunopharmacol 142 (Pt A), 113091 (2024)
   PUBMED   39255680
  REMARK    GeneRIF: RNF39 facilitates antiviral immune responses by promoting
            K63-linked ubiquitination of STING.
REFERENCE   2  (bases 1 to 1446)
  AUTHORS   Wang,W., Jia,M., Zhao,C., Yu,Z., Song,H., Qin,Y. and Zhao,W.
  TITLE     RNF39 mediates K48-linked ubiquitination of DDX3X and inhibits
            RLR-dependent antiviral immunity
  JOURNAL   Sci Adv 7 (10) (2021)
   PUBMED   33674311
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1446)
  AUTHORS   Matsuo,R., Asada,A., Fujitani,K. and Inokuchi,K.
  TITLE     LIRF, a gene induced during hippocampal long-term potentiation as
            an immediate-early gene, encodes a novel RING finger protein
  JOURNAL   Biochem Biophys Res Commun 289 (2), 479-484 (2001)
   PUBMED   11716498
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC145677.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC132405.1, BC038661.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 19.16 cM"
     gene            1..1446
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /note="ring finger protein 39"
                     /db_xref="GeneID:386454"
                     /db_xref="MGI:MGI:2156378"
     exon            1..400
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..1096
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="RING finger protein 39"
                     /protein_id="NP_001093102.1"
                     /db_xref="CCDS:CCDS50103.1"
                     /db_xref="GeneID:386454"
                     /db_xref="MGI:MGI:2156378"
                     /translation="MEAPELGPGLVERLEQLATCPLCGGPFEDPVLLACEHSFCRACL
                     ARCWGAPAASGSEAAPPSCPCCGQPCPRRSLRSNVRLAVEVRISRGLREKLAEPGARA
                     GRRRGGRIPTMGCLDPHGEDMRKTWRRFDVPAPKPSNSEEDLPEDYPVVKNMLHRLTA
                     DLTLDPRTAHRDLLISSDYRGVSLAPPGTPAPLDSPARFDQLPAVLGAQGFASGRHCW
                     EVETAEGASFRDSTAQDENAGESCYAVGAAGESVTRKGLIKLCPSEAIWAVEGRGGRL
                     WALTAPEPTLLGGARPPPQRIRVDLDWERGRVAFYDGRSLDLLFAFQAPGPLGERVFP
                     LLCTCDPRTPLRILPGEA"
     exon            401..423
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /inference="alignment:Splign:2.1.0"
     exon            424..515
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /inference="alignment:Splign:2.1.0"
     exon            516..1446
                     /gene="Rnf39"
                     /gene_synonym="Gm1786; Gm1787; Gm320; LIRF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgaggac tagggtgcgt cgggacccct gctttccatg gaggctcccg agctgggccc
       61 ggggttggtg gagcgtctgg agcagctggc gacatgtccg ctgtgcgggg gccccttcga
      121 ggacccagtc ctgctggcgt gcgaacacag cttctgccgt gcgtgcttgg cgcgctgctg
      181 gggggccccg gcggcgtccg gctcggaggc ggcgccccct tcctgcccgt gctgtggcca
      241 gccatgcccc agacgcagcc tgaggtccaa cgtgcgactg gcagtggagg tgcgcatcag
      301 ccgtgggctg cgtgagaaac tggcggagcc cggagcccgg gccgggagac gacgcggtgg
      361 ccgcatcccc accatgggtt gcctggatcc ccacggagag gatatgagga agacatggag
      421 acgattcgat gtcccagcac ccaagccatc taactcagag gaggatctcc ctgaagatta
      481 ccccgtggtc aaaaacatgc ttcacaggct gacagctgac ctgacgctcg accctcgcac
      541 agcacaccgt gatctgctca tctcctctga ctaccgcggc gtgagtctgg ctccacccgg
      601 aacgcctgcg ccgctggaca gccccgcgcg ctttgatcag ctcccggcgg tgctgggtgc
      661 gcagggcttc gcgtcaggcc gccactgctg ggaggtggag accgcggaag gcgcgtcctt
      721 cagagactct acagctcagg atgagaacgc gggagagagc tgctacgccg tgggcgctgc
      781 cggggagtcc gtgacccgca agggcctcat caagctgtgc ccatcggagg ctatatgggc
      841 cgtggagggc cgcggcggcc gcttgtgggc gctcacggct ccagagccca ccctgctagg
      901 tggtgccagg cccccgccgc agcgcattcg cgtggacttg gactgggagc ggggtcgtgt
      961 ggccttctat gacggccgct cattggactt gctcttcgcc ttccaggcgc cgggcccgct
     1021 cggggagcgt gtcttccccc tgctctgcac ttgtgacccg cgtaccccgc tgcgtatctt
     1081 gcctggagaa gcctgagcct caggtctcta gctcctaccc taccgcagta gtccagatgg
     1141 cctcgaggct acttctgtcc cttgcacaaa tccccacctg tttcagtgac cttgtctgta
     1201 acacctatcg gaacaggagt attaataagc accctttgtc cactcacatt ctcccaaatc
     1261 aaaacctcaa ctggcttgta cattcgtgcc tttaagccag tctagtcccg agtctccatg
     1321 acctaagacc tttttcttga gtcctctttc cgtaccattc taggccaggc tagagaaaga
     1381 ggctctgttt gtaccaccag tgttgggaaa cagtcctaat ttacctccaa tcccaaaagg
     1441 ctcagg
//
