LOCUS       NM_178607               5943 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ring finger protein 24 (Rnf24), mRNA.
ACCESSION   NM_178607
VERSION     NM_178607.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5943)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5943)
  AUTHORS   Liang,J., Liang,J., Tan,Q. and Wang,Z.
  TITLE     ELAC2 Functions as a Key Gene in the Early Development of Placental
            Formation Based on WGCNA
  JOURNAL   Cells 12 (4), 613 (2023)
   PUBMED   36831280
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5943)
  AUTHORS   Malcuit,C., Trask,M.C., Santiago,L., Beaudoin,E., Tremblay,K.D. and
            Mager,J.
  TITLE     Identification of novel oocyte and granulosa cell markers
  JOURNAL   Gene Expr Patterns 9 (6), 404-410 (2009)
   PUBMED   19539053
REFERENCE   4  (bases 1 to 5943)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   5  (bases 1 to 5943)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL808128.4.
            
            On Nov 8, 2022 this sequence version replaced NM_178607.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096529.1, AK048813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               AL808128.4         158006-158116       c
            112-261             AL808128.4         118433-118582       c
            262-304             AL808128.4         113745-113787       c
            305-346             AL808128.4         110922-110963       c
            347-426             AL808128.4         109522-109601       c
            427-5943            AL808128.4         103334-108850       c
FEATURES             Location/Qualifiers
     source          1..5943
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 63.32 cM"
     gene            1..5943
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /note="ring finger protein 24"
                     /db_xref="GeneID:51902"
                     /db_xref="MGI:MGI:1261771"
     exon            1..111
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     exon            112..261
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..565
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /codon_start=1
                     /product="RING finger protein 24"
                     /protein_id="NP_848722.1"
                     /db_xref="CCDS:CCDS16762.1"
                     /db_xref="GeneID:51902"
                     /db_xref="MGI:MGI:1261771"
                     /translation="MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAVFVFILSLLFCC
                     YLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHR
                     KCLVKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQEPLPGAENIV"
     exon            262..304
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     exon            305..346
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     exon            347..426
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     exon            427..5943
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5497..5502
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /note="hexamer: AATAAA"
     polyA_site      5519
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /note="major polyA site"
     regulatory      5919..5924
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
                     /note="hexamer: AATACA"
     polyA_site      5943
                     /gene="Rnf24"
                     /gene_synonym="2810473M14Rik; 4930505A13Rik; D2Ertd504e"
ORIGIN      
        1 agtcgctacc gccagctcag cggctcggac tcacggacgc ggctctagca gttcaccgca
       61 agaagctgac tccgggcgcc gccgcccgca cgcccgctgc ccgtcgcccg gttcatccat
      121 gagctcagat ttcccacatt ataacttcag gatgcctaat attggattcc agaatctgcc
      181 tctcaacatc tatatcgtgg tttttggcac tgctgtgttt gtcttcatcc ttagtttact
      241 cttctgttgc tacttgatta ggctgagaca tcaagcacac aaagaatttt atgcctacaa
      301 acaggttata ttaaaagaaa aagtaaaaga acttaatcta catgagctct gtgctgtgtg
      361 tctagaagac ttcaagccta gagatgaact gggtatttgc ccatgtaagc atgccttcca
      421 cagaaagtgc cttgttaagt ggctggaagt ccggaaagtg tgtcccctgt gcaacatgcc
      481 ggtgctgcag ctggcccaat tgcacagtaa acaggaccgc ggtccccctc aggagcccct
      541 ccctggggca gagaatattg tatagcttgc tgcaaggatc agactgttgc tggacacatc
      601 agtatggagc caggaggaac acaagcagac tccgttttgg ctgctctctg cctggggcac
      661 ccactgtcac ttcctttgcc tcatgaagaa ctcttgagcc aggcaagctg agaccccagg
      721 catctggatc ttgtgacaac caaagcaccc tgacattacc caacgccaaa aggagtggat
      781 gagcctgcag atttggtttc agaagtttcc tgagcatcgc ctgtgtctcc caggcatctc
      841 cacatcaaac aaaagggaag ataagcacag gtgttagaga gcagagctgt gaatgtggct
      901 ttgatgccat cccacctgtg gacctgtaag ctgctgtgca gacttgacag cctgttgccg
      961 ccacatgtcc tcttgacatc cgagtctagt gaagccagtt gttccatcag ctgaagcaaa
     1021 actggctgtc agtatttggt gaggcagccc tgcaaggctt ttcgggttct gttcttttaa
     1081 taaggccatc ttggaacctg aagactttgg ggacagcagc agcagaaccc ctgccacacg
     1141 tgccagttca cacttgctgt caaaccttcc aggttgaagc cattggaaac atttggaaag
     1201 gcctggtcag gagccatccc acttccgttt gccctcctag tcatcagtaa gacccagcag
     1261 gagcttaatc ctgaacctcc atggtccctg tgtaacccag gggccagagt actgctcaag
     1321 tataccacaa gtgtagtgtg attccattac agctgctggc ctcagcccac tggctaagga
     1381 gtgtctcttg gcccctcaga tggctccaac gaagagcctc ttagcaaagc cagtcctcac
     1441 ccaccaggac ggccagggca gacactttgg cttctctcct ctgctctttt tctacataag
     1501 aaaaatgtct tactgcattt ttaaacattt atcccaaatc agctccctgt aattccgaag
     1561 ccagcaagcc acttggagtt gtaaatagtt tgaggaagct cccgcatggc tggccttctg
     1621 ttggtgtgta cctcagttct atggacttga gatccctaac tgaaggggtt tttataggga
     1681 aaatgcatgc tgctctttgg ctctttctgt ccaacttttc tagagataac tgcctccaat
     1741 aggctttgtg aacagtgtaa attcgccgtg taaagcacag actcttattc ttacatagct
     1801 tgctctccct tcccttgtca caacagtgcc actgcaatgc ctcttcaact gctctgctct
     1861 gctccatccc acaggtgtga ggaaatgttt tcatgaagta cattctggca tggagatgga
     1921 gggctttgct actctgttct tggattagaa tccttactta gaataagagg ggacctgcct
     1981 ttgcctccag tagctgggat cagttgagga agaaaattcc aatttgtcta aaaagtgctg
     2041 tggaagccaa gttgtggcag tatacatctg tatagtccca gctgaggcag gcagtgtcac
     2101 aagtttgaaa ccagacttgg cttcatagtg agatcctctt gcaaaaggag gcagcagggg
     2161 taagaatagg ggctcttggc agagtccata tggaaaatta caaatccagt tggaaagaat
     2221 aagctgttcc cagtgtgctc tgtgaccagc cagctggatt cctatgcagg gcaagggagt
     2281 gtgaaacttt ctatgggagc cttagcttga ttgactccag taattcatac ctatgtccct
     2341 ctttgcagta ccatagtcaa atgcccacac tcagtttaca gtgaaatgtt ctcaagtgac
     2401 taacgccaca agtgggcttc tcctggctta gttttgttat aggctagcat ctagcatttc
     2461 atattgcata actggataca ataaggaaat ccccccttaa agatttcaat atgatcgata
     2521 ctataaatta ttgccactca cagctttcat agaatcttgg cctttagttt tagctgcggc
     2581 ttctcctgtc cttggattca accactcaaa agccagcatc accaaagccc cgtatttcta
     2641 gaggcaagat tgctcattag acttgcagat aggttgaggt ggttggtgtg caacctgaat
     2701 agtcaggggc attggaagaa tcctgggtgc tttgctctgc tcaacctgaa tgaggtctcc
     2761 taaccttttc tgctcagcca ctcttaatgt gatttcttcc caaaaggcat tccttgggct
     2821 ggaagctgca gctgcaaagt atgtttctca tctcccttct tggccactgc tcccacttct
     2881 ggcacctgcc agccacagca acccaatatt tgctcctgat gtctgggtcc cccctcagtg
     2941 cttcctctgt atctgcagca ttggcccaaa cttacaatga gatcactctt tccacaccat
     3001 tcctaagttt ctggtaacct tttgtgtgga tgtgtgagga tttgggtcta ctctcaagac
     3061 cactgaactc ttatgtgtct ttaagtagct agaggattgg gtgtcactgt ggactgtagt
     3121 gttagaagtg gaacaaaacc tatctatcct acctgggtca ctgtaacata aaaaaattga
     3181 cacctgcagc ttttctttgt caagtgtaat ttagtttggc ctattcctat ttaaggttct
     3241 tttaacatgt acttgcctaa ccaggaagta gaacaaaaca gccatgtagg gacaggtagc
     3301 ctctgggcga gatctgtgct gaggaacaag gggcctccca ccattgccaa acactgttct
     3361 tgacaagact tgacaaaaag atctttccca tggctctgtt ccacagcatg ctatctctaa
     3421 cttggaatag ccactctaag ctgtgctaaa tacctacaac acctactttc tgagaatttg
     3481 agactatata gagacgttcc tgagagctct atacagaaat gcttggacta gtttgaattg
     3541 gttacttgtg cttttctgta ggtcaatctc tcagaccctc ctttctttag ccaccaccta
     3601 ggaactagca aggtttctag atgatctgcc agtccagtct ggtaggcaca ggcacagggg
     3661 agcaggagct gctgatagca cataccttcc tggtcacaaa ctcaggaact tctgaactat
     3721 gggactaact cctggctcca ccacagtctc tctttgagac aggttctgtg tactcccagt
     3781 tattctgaaa ctgtatagac caggctggcc tcaaaatcag aaatccaggg ccttctgcct
     3841 ctgctacaat taaaggcaga gcaccatgcc gagcctccac attgaatctt gacttgctca
     3901 gtcttccttg agtctttgaa taggtaatcc ttataaaatt cacacatcac aatagttgcc
     3961 ttccttgaaa aactatccca tgagcactgg attcattttt gtttctttag tctcctttta
     4021 tgggaatgtg gggtgggggt gggggcagag gctatacaga gagcttaccc agaagtgtat
     4081 tgagtgtatt gtgtgtgaaa ggtaagcctg aagtagaggt ttttgcattt acattccttt
     4141 ttatatggct tccttcacag atccatccct cagtatccct aataaaacag cacagctgct
     4201 tcccctacct tctccaggat gacaaaagct tgccccccag tcctaatcag tctctccagg
     4261 tgcctggacc agctgccatc ttcctccctc tccttagttg gtgcctgtgc ttttgaagca
     4321 ggaaagcatg tagtaagaga tctcttaagt ccccagggct aacagtcatt ctgcaaatga
     4381 gacatagaag caaatacttt gtatagaatt ttcccacacc caactctttt ttgccctctc
     4441 cccttctaag gtaaaagttc tccttcaggc agccagtgag ggagaaagca tacctgtacc
     4501 ttgctctcca gcatccacca cccaaggtct cccctactca cctgcttccc tgcagcctaa
     4561 gctgcagcca gtgggtaagg aggagactcg cccctttggc acttcatcga ctctagcctg
     4621 gttaatcttc cctgataaga acctcctgag gagctggtga gattgttcag tggctcagag
     4681 cactggccgc tcttccgatg acccaggttc agctcataga acccaccttg tgaccctcag
     4741 cttcaatctg taacttcagt tacagatctg gcatctgagt gtaccaggtg caaacatgta
     4801 catgcaagca aacactcata cacataaaaa taaattttta tttttaaaaa attgcttaaa
     4861 tgggaccatc aaagtattta acttaatctt agaggtaggg acctaaaatg ccaggtaaag
     4921 gttttttaaa taagattaac aggacctatc agttttcaag ttcagcttta gaacccaaat
     4981 tatttcaaga tgcttttatt ccagttagct cagcacgtat ccaaattctt cgttcctttg
     5041 ttcacaggat caggaaaagc tacccctgct gtttcaaaga cacgctgtag ctcagatcat
     5101 gacctcacca gtgttaaggg actcatgtgg ttgaaccctc agcgccgtcc atgcctctcc
     5161 ttccaggctg tggtggagaa tgtgacggct tggggccatt gcctctgtct gaggacatgt
     5221 ccaggaaggt ggaggaatgg cactttagtc ttgtcgttta gccctatggg gcttatttac
     5281 tagatataac tccctcaaaa aaggtttatg aaatgctgag cctcaggttt catagacgtg
     5341 tttgtacact aagaattctg cagcagaata tttttaaaca ttggtttttg taagctatat
     5401 ttttgtatat ttaattgcta ttttaaaact ttaatgcatt ttttgctaat cacttgttta
     5461 aaaataaaac atgcatgtaa tcgacccaaa cgtgtaaata aagagcaaat tttgaaatac
     5521 tttgtatttg gacctgtcaa cttttgcact agggcgaggt aaggtgtggc acactgatgg
     5581 gggaaaggca tcaggccaca ccacaccatg cattgcattt gtggtggctt gatgtatata
     5641 gctttgtcct ttgacagtct gccacattcc cagaacttgc cctaacccta atgccaggtg
     5701 gtgagcggct ctgaactcag ctttagccca tggcttcacc aaggcacacg taaccctgga
     5761 gctacctcca agcaaccttg taacccatct ctataaccgt ttgctcttgg actcccggat
     5821 ccctgtaccc caggttgttt tccctgtaac ctgctccttc actgccgatt attattattt
     5881 tcttgtgctc tggggttcac taactcctcc cacaaataaa tacatcctct gcgttgtctc
     5941 tga
//
