LOCUS       NM_001413473            2086 bp    mRNA    linear   ROD 07-AUG-2024
DEFINITION  Mus musculus ring finger protein 227 (Rnf227), mRNA.
ACCESSION   NM_001413473
VERSION     NM_001413473.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645527.20.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB041807.1, BC021519.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-603               AL645527.20        257019-257621
            604-2086            AL645527.20        257722-259204
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 42.52 cM"
     gene            1..2086
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /note="ring finger protein 227"
                     /db_xref="GeneID:80515"
                     /db_xref="MGI:MGI:1915359"
     exon            1..603
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..659
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /note="Chd3 opposite strand transcript; chromodomain
                     helicase DNA binding protein 3, opposite strand"
                     /codon_start=1
                     /product="RING finger protein 227"
                     /protein_id="NP_001400402.1"
                     /db_xref="GeneID:80515"
                     /db_xref="MGI:MGI:1915359"
                     /translation="MQLLMRVPSLPELGELDCNICFRPYNLGARAPRRLPGTARARCG
                     HTLCTACLRELAARGDGSRTAARVVRLRRAVTCPFCRAPSPLPRGGVTEIALDPVLWS
                     RLEEKARAEREGDPMGSPAKDSGEDGEDDDGEAESEKGAGPPSAGWRALRRILDRVLA
                     PARRLRRPLPSNVLYCPEVKDIAHMTRCTL"
     exon            604..2086
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2063..2068
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /note="hexamer: AATAAA"
     polyA_site      2086
                     /gene="Rnf227"
                     /gene_synonym="2310043C11Rik; A030009H04Rik; Chd3os;
                     MNCb-2875; RNF21"
                     /note="major polyA site"
ORIGIN      
        1 aggcccctgc cctggcccaa ggagggctca ttcgttctgt atcctagccg cctagagatc
       61 gaagccctcg ggccacggtg accacgatgc agctcttgat gagagtgccc tctcttcccg
      121 agctgggtga gctggactgc aacatctgtt tccgacccta caacctcggg gcccgtgcgc
      181 cccgccgcct gcctggcacg gcgcgcgccc gctgcggcca cacgctgtgc acagcttgcc
      241 tgcgcgagct ggcagcgcgg ggcgacggca gccgcacggc cgcgcgcgtg gtgcgcctgc
      301 gccgcgctgt cacgtgcccg ttctgccgcg cgccttcccc gctcccgcgc ggcggcgtca
      361 cggagatcgc gctagaccct gtcttgtggt cacggctgga ggaaaaagcc cgggctgagc
      421 gtgaaggaga cccgatgggg agcccggcca aagacagcgg agaggatgga gaggacgacg
      481 acggggaagc ggagagcgag aagggggcgg gacctccaag tgcgggttgg cgcgcgcttc
      541 gccgaatttt ggacagggtc ctggcgccgg cacgccgctt gcggcgtccg ttgcctagca
      601 atgtgctcta ctgtccagag gtcaaggaca ttgcccacat gacccgttgt acgctgtaac
      661 caaggaaccc cagagctatg gcagaaagca ggtgggagca gcatcctcag gcgtgctctg
      721 acacaaaagg ttgatgtcaa gactacctgg aaatcaaggc tgatgctgga attggtacat
      781 gcgtgatgga gatggagctc aacagaaagg accctagatg gtgtggattc tgagcggcga
      841 aggctcctag actgtgccag cattatattt tcaggatgga gtggccaagg gataatagaa
      901 acaaagccta ccataatgta ggaagaaaaa aaaaataaca aagctttggc gtttgttcag
      961 agtctgtggt gtaagcaaag gatccaattt tagcagtggt ctgtggttga caatgtgtac
     1021 tgtggaaaaa aggacaggac aggggataag ctaatttata tgtcatgtca atctcactta
     1081 tctggttgtg tttgctggca tgccatcttc ccactcttgt taccgtgctc cagcaattac
     1141 tgagttgact ccctgcttat gattgggaat cttgcatata caacctccct tcagctggat
     1201 agggcaggta tgaaaacatc caaggggcat ttatttacat gaggccttat taaaggctta
     1261 tcaaagatgg gtgagccatt tgataaagga agcaaaattt aggcctttgt tatctttact
     1321 gactctgtag caatactggg gaaaagaaaa aaaaagatgc tcacataatt ttaatttgtg
     1381 tcccataatg ggacattgtt tactgtatgt agttagttct attctaaagt cctgtaaata
     1441 tcttactgta gacttaaaat caagaccagc agtgttggtt ggtctcacag cttgctagaa
     1501 atgcagaatt tcaggacccc agtccacatt ccccggtagt tttagaatcc caggtatgtg
     1561 tatgtaagtt aagaatcact ggtttagctc ttagtcactc tgagatggca tcatcagctg
     1621 taggtggaac atttaaaaca ctagtgacgc attaaagtgc caaagtgaca ttcttttgag
     1681 aaaaattttt ctgagctaca aatgtgaatt tacaaggcct cagttttcag aggtcttcaa
     1741 gattttgttt ttaatgacaa ataatgtatg tagttctagg gtataaacct ccatttgtaa
     1801 aatgttttgt ctttttcctg tccttcggtt ccagctgaaa tctccccttt tggaggccag
     1861 catgcatctg tgggaatgtg tatgttttct ctatacgtgt tgccaaaggg aatgctatgt
     1921 ttattttctg ctattttatg ttttgagtat ttctagagta taaatttcaa gtgactatct
     1981 ccagagccga tagcagtgtt aatgttatat gtattcaaaa aaaaatgttt gctgaattta
     2041 ttttgaatgt aatagtctct agaataaagt atctgggctc attcaa
//
