LOCUS       NM_027859               1937 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus ring finger protein 215 (Rnf215), transcript variant
            1, mRNA.
ACCESSION   NM_027859
VERSION     NM_027859.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CX203997.1, BC115907.1, BM120893.2 and BM948157.1.
            
            On May 9, 2018 this sequence version replaced NM_027859.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002414.1, BC103627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-284               CX203997.1         1-284
            285-1434            BC115907.1         232-1381
            1435-1918           BM120893.2         1-484               c
            1919-1937           BM948157.1         509-527
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 2.89 cM"
     gene            1..1937
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /note="ring finger protein 215"
                     /db_xref="GeneID:71673"
                     /db_xref="MGI:MGI:1918923"
     exon            1..404
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1253
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1"
                     /codon_start=1
                     /product="RING finger protein 215 isoform 1 precursor"
                     /protein_id="NP_082135.2"
                     /db_xref="CCDS:CCDS24378.1"
                     /db_xref="GeneID:71673"
                     /db_xref="MGI:MGI:1918923"
                     /translation="MGSADRPALRSPSLPPPPPSPPSPLLLLLPLLPLWLGLMGPGAA
                     ADGSEPATGEGRGGARSVRVDVKLPRQDALVLEGVRIGPEDGPEPLLGGRLLLMDVVD
                     AEQEIPVDGWIAVAYVGKEQVAQFHQENQGSSQKAYPKALVQQMRRALFLGASALLLL
                     ILNHSVVRELDVSQLLLRPVIVLHYSSNVTKLLEALLQRTQATAEISSGESLSANIEW
                     KLTLWTTCGLSKDGYGGWQDLVCLGGAQAQEQKPLQQLWNAILLVAMLLCTGLVVQAQ
                     RQASRQNQQEPGGQEDLFKRRVVRRLASLKTRRCRLSRAAHSLPEPGTETCAVCLDYF
                     CNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGNHYSDD"
     exon            405..548
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            549..620
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            621..706
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            707..863
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            864..983
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1127
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1230
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1937
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1893..1898
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /note="hexamer: AATAAA"
     regulatory      1916..1921
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /note="hexamer: CATAAA"
     polyA_site      1921
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
                     /note="major polyA site"
     polyA_site      1937
                     /gene="Rnf215"
                     /gene_synonym="0610009J22Rik"
ORIGIN      
        1 ggccccgccc ctcccggtgc cgagccccgc cctgtccggc gcggcctggc tcactctgtt
       61 ctcccggtcc ccgggacctt agactacggc ctcgccacct ctccggtcgg atcatgggct
      121 ctgccgatcg ccccgcgctg aggtcgcctt cgttgccgcc ccctccccca tcgccgccgt
      181 cgccgctgct gctactgctg cctctgctgc ctttgtggct gggcctgatg ggcccgggag
      241 cggcggcgga cggcagcgag ccggcgaccg gggagggacg gggcggagcc cgctcagtgc
      301 gagtggatgt gaaactgccg cggcaggacg ccttggtttt ggagggcgtc agaatcggtc
      361 cggaagacgg tccggaacct ctgctgggtg gccgcctgct gctgatggat gtcgtggatg
      421 ctgagcaaga gatacccgta gatggctgga ttgcagtggc atatgtgggc aaagagcagg
      481 tcgcccagtt ccaccaagag aatcaaggca gtagccagaa ggcatatccc aaggctctgg
      541 tccagcagat gcgtcgagcc cttttcctgg gagcctctgc cctgcttctc ctcatcttaa
      601 accacagtgt ggtccgagag ctggatgtat cccagcttct gctgaggcca gtgattgttc
      661 tccattactc ctccaatgtc accaagctgt tggaggccct tctgcagagg acccaggcta
      721 ctgctgagat cagcagtgga gagtcccttt cagccaacat cgagtggaag ctgacattgt
      781 ggaccacctg tggtctctcc aaggatggct acggaggctg gcaggacttg gtgtgcctgg
      841 gaggtgctca ggcccaggag cagaagcccc tgcagcagct atggaacgcc atcttgcttg
      901 tggccatgct cctgtgtaca ggacttgtgg ttcaggccca acggcaggcg tcaagacaga
      961 accagcagga gcctggaggc caggaggatt tgttcaaacg ccgtgtggtt cggaggctag
     1021 catctctcaa gactcggcgc tgccggctga gcagggcagc acacagcctt ccagagccgg
     1081 gcactgagac gtgtgctgtg tgtctagatt acttctgtaa caagcaatgg ctccgggtac
     1141 tgccctgtaa gcatgagttc caccgagact gtgtggaccc ctggctgatg ctacaacaga
     1201 cctgcccact gtgcaagttc aacgtcctgg ggaaccacta ctcagatgac taactgcccc
     1261 agtggaaagt ctgcagttcg ggacggaccc ttcccagcct acactacagg agagtgggat
     1321 ggacagacca gctagccctg tgggcaaagg aaaggtccca ccatgcccat ggcgggtaga
     1381 agggcctccc agctccaggc tgaacacaga gccggaccca gcaggcaagg agaaatcatt
     1441 aagagccctt ctctgcaaac ctggggtatt tgtgtctgtc ctcataggcg gctcccacaa
     1501 ctctgggaag aacatacggc cattacacct gtccccagca ctccggagcg tcagtgttga
     1561 gttttatgct atctattggg ggatagatga ggggaaagat gtgtggccat gggacccact
     1621 ggcaggaacc tgtctttcag gccagggcct gatcaatgac tttaaagtga gcctgctccg
     1681 tgacctgctg cctgtccagc tgagttcttc caggctggct gggttcagag gccttagaaa
     1741 ccatctagtg ctgtatttct tggttgggct aaatgttact gaccaggata cttgaggcca
     1801 cagaatctat gtggtgcatc tgcaagggca tcattaaaag gaaaaaacaa aaacacaaaa
     1861 caaatgtttg ggtagggaag ttttaatagt aaaataaaca tggaatctat tttaacataa
     1921 atctgttaag acataaa
//
