LOCUS       XM_006517756            2659 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ring finger protein 180 (Rnf180),
            transcript variant X3, mRNA.
ACCESSION   XM_006517756
VERSION     XM_006517756.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006517756.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..2659
                     /gene="Rnf180"
                     /gene_synonym="3110001E11Rik; Rines"
                     /note="ring finger protein 180; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 15 ESTs, 543 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:71816"
                     /db_xref="MGI:MGI:1919066"
     CDS             81..1862
                     /gene="Rnf180"
                     /gene_synonym="3110001E11Rik; Rines"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF180 isoform X3"
                     /protein_id="XP_006517819.1"
                     /db_xref="GeneID:71816"
                     /db_xref="MGI:MGI:1919066"
                     /translation="MMKRSEESTSTQSPEEQTGTLHCWRCRKCIASSGCFMTPLETQV
                     VEQDRHESVDAQNTCHLWHMNVDALPEWISCLLQKAQWTVGKLNCPFCGARLGGFNFV
                     STPKCSCGQLAAVHLCKSRTDHQAAQGGRLMRPALKHLPHPGVPSGCDKETLLTGGGS
                     KTRNHWLLSMARNSNGLGRLTEALCLEVRATYFEMKNEKLLFKASDPKCQPFVPQPDT
                     GRCPSRASHRKSHSLDLNISEKLILLPTLYEIHRKPTAYPRLNETGPIDLSGLALPCS
                     NSSCSFQSPPSFDPNMLLHRLSVAPHETQAQRGRECQCGLEASSVYSDHANANSLPFL
                     MDLPSAGRSVLEASDQEEHLSQLDFLRSASFPLGTINHRLNNRERSKLRTLRRQQRRE
                     RWLQKQGKYSGVGLLDHMTVSNEMSTDEETEFPEEKDSYMCAVCLDVYFNPYMCYPCH
                     HIFCEPCLRTLAKDNPASTPCPLCRTIISRVFLQTELNNATKTFFTKEYLKIKQSFQK
                     SSSAKWPLPSCRKGFHLFGGFHRRAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDM
                     VIIYIYSVNWVIGFVVFCFLCYFFFPF"
ORIGIN      
        1 ggctgagatg atgagcgagc tctgaagtgc atctggaccc ggtggagcca agggtccccg
       61 gggtggaagt tattctgagc atgatgaaaa gaagcgaaga gtcgacaagt acgcagagcc
      121 ccgaggagca aacaggcacc cttcattgtt ggagatgtag aaaatgcatt gcaagttctg
      181 gttgcttcat gactcctctt gagactcaag tggttgagca ggacagacat gaatcagttg
      241 atgctcaaaa cacctgtcac ctgtggcaca tgaatgtaga cgcccttccg gagtggatca
      301 gctgcttgct gcagaaggcc cagtggacag ttgggaaact gaattgtcct ttctgtgggg
      361 cccgattagg gggctttaat tttgtcagca ctccaaaatg ttcctgtggc cagcttgcag
      421 ctgtacatct ctgcaagagc cggactgatc accaagcagc acagggaggg agactaatga
      481 gaccagcgct gaaacatttg ccacatcccg gagtcccgtc aggttgtgat aaggaaactc
      541 tgctgacagg tggtggctcc aaaaccagaa accactggct tttaagcatg gcccgaaaca
      601 gtaacggcct cggaagactt acagaagcac tctgcctgga ggtgcgagcg acgtattttg
      661 agatgaagaa tgaaaaactg ctcttcaaag cctcggaccc aaaatgccag ccttttgttc
      721 ctcagcctga caccggcagg tgtccttcaa gagcgtctca cagaaagtca cacagtttgg
      781 acctgaacat cagtgagaag ctgattttat tacccacttt atatgaaata catcgtaagc
      841 ctactgccta tcccaggcta aatgaaacgg ggcccattga cctttcaggc ttggctttac
      901 cgtgtagtaa cagtagctgc tcctttcaaa gcccacctag ttttgatccg aatatgctgc
      961 tgcacagact ttcagtggct ccccatgaga cccaggcaca aaggggaaga gaatgccagt
     1021 gcggcctaga agcttcttca gtctactcgg atcacgctaa cgctaacagc ctgccattcc
     1081 tgatggatct gccctcagca gggaggagcg tgctggaggc ctcggaccaa gaggagcacc
     1141 tctcccagct ggacttcctg cgctctgcca gcttcccctt gggcaccatt aaccacaggc
     1201 tgaacaacag ggagagaagc aagttgagga ctctgcgaag gcagcagagg cgcgaacgat
     1261 ggctacagaa gcagggtaaa tactcaggag tgggcttgct ggatcacatg accgtgagta
     1321 atgagatgag tacagatgag gaaacggagt tcccagagga gaaggacagc tacatgtgtg
     1381 cagtgtgcct ggatgtgtac ttcaacccct acatgtgcta cccctgccac cacatcttct
     1441 gcgagccctg cctacgaact ctggccaaag acaaccccgc aagcactccc tgcccactgt
     1501 gccggacaat tatttctaga gtctttctcc agacagaact gaacaatgcc acaaagacat
     1561 tctttactaa agaatatttg aaaatcaagc aaagctttca gaaatccagc tctgcgaagt
     1621 ggcccttgcc gagctgcagg aaaggattcc atctcttcgg aggattccac aggcgcgccg
     1681 ccccagtgac acggaggcag ttcccgcacg gcgctcacag gatggactac ctgcacttcg
     1741 aggacgacag ccgtggatgg tggtttgaca tggatatggt gatcatctat atttattcag
     1801 tgaactgggt cattggattc gttgttttct gctttctttg ctattttttc tttccgtttt
     1861 aggaatcgtt gtactctgct ctaattgaac aatcataaat gtaaacaaca atggcttgaa
     1921 cattttcaaa gtgtgcttcg aagtttttat aatattgcat tataaaaatt gttagtgttt
     1981 atagaaatcc tgagggtaat ggatttattt attaatttct ttcatgtaac aacctaaact
     2041 ttattcatga gctggtctcc agccattaga aacagtgcac tactaattca tactttttac
     2101 tttaggactt ggggctctga ttttacaatg tcatttttat acttactatg attgtaaaga
     2161 ctgaggtttt acctccattt aaaaatagta gaaaaaatga ataatctgga tggataccat
     2221 cattattact aagatgttta gtcaagcact atgtattctt aggcaaatga tgtacgttaa
     2281 agatagacca tattctctgg gaactaatca agcagggtat atattgcatt ttgatttctg
     2341 aatatctcta cttctgtctc ctattaccaa aaatgtgact atccttttgt aaagacttca
     2401 tagctttggt gcaacatttt taactattgt aagaacaaaa tattacatgc agtaagacta
     2461 acacccaaga gctatgtttg agagccatat taacaccttc caacttcaca atgaatcact
     2521 tgagaaataa caaatctgac ttttagtaac cttactgatc agtgcatgtc caaactgtaa
     2581 ttaacctggt gattcattta actagacagt tgtcaactat attgtcaatg tgcaataaag
     2641 agtggctttt acattttta
//
