LOCUS       NM_153503               1246 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ring finger protein 113A1 (Rnf113a1), mRNA.
ACCESSION   NM_153503
VERSION     NM_153503.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1246)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1246)
  AUTHORS   Oda,M., Yamagiwa,A., Yamamoto,S., Nakayama,T., Tsumura,A.,
            Sasaki,H., Nakao,K., Li,E. and Okano,M.
  TITLE     DNA methylation regulates long-range gene silencing of an X-linked
            homeobox gene cluster in a lineage-specific manner
  JOURNAL   Genes Dev 20 (24), 3382-3394 (2006)
   PUBMED   17182866
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY320486.1, AK013178.1 and AL451076.14.
            
            On Sep 1, 2015 this sequence version replaced NM_153503.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC024906.1, AK146283.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-357               BY320486.1         2-358
            358-1138            AK013178.1         298-1078
            1139-1246           AL451076.14        118910-119017
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.61 cM"
     gene            1..1246
                     /gene="Rnf113a1"
                     /gene_synonym="2810428C21Rik; Rnf113a"
                     /note="ring finger protein 113A1"
                     /db_xref="GeneID:69942"
                     /db_xref="MGI:MGI:1917192"
     exon            1..1246
                     /gene="Rnf113a1"
                     /gene_synonym="2810428C21Rik; Rnf113a"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1196
                     /gene="Rnf113a1"
                     /gene_synonym="2810428C21Rik; Rnf113a"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF113A"
                     /protein_id="NP_705723.1"
                     /db_xref="CCDS:CCDS30072.1"
                     /db_xref="GeneID:69942"
                     /db_xref="MGI:MGI:1917192"
                     /translation="MAEQLSPGNSTRQVCTFLFKKPGRKGAAGRRKRRLCDAGSGDSC
                     SSSDEGSSVVRPEKKQATHNPMIQKTRGSAKQKATYGGLSSEDENEPEGLGVVYKSTR
                     SAKPVGPEDMGATAVYELDTEKDRDAQSIFERSQKIQEELRGKEDDKIYRGINNYQKY
                     VKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFL
                     HDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEEIPFKCFICRQTFQNPVVTKCR
                     HYFCERCALQHFRTTSRCYVCDQQTNGVFNPAKELIAKLGKHRAEAEGGVSDSLEDIE
                     ESPVSII"
     regulatory      1221..1226
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rnf113a1"
                     /gene_synonym="2810428C21Rik; Rnf113a"
                     /note="hexamer: AATAAA"
     polyA_site      1246
                     /gene="Rnf113a1"
                     /gene_synonym="2810428C21Rik; Rnf113a"
                     /note="major polyA site"
ORIGIN      
        1 gggggcccaa aagtgactgg cgttcgcggt ccagcaagcg ttcccggaca ggattctttc
       61 tgtcgtccta ctcctcctat ctgatccgct gcatcagaga ccaccacgga gtgtgacgac
      121 gcgaagcggt cccggacgtc gcggcagttt cagaacttgg ggatctctaa atggcggagc
      181 aactttctcc cgggaattct acccgtcagg tgtgcacgtt cctcttcaaa aagcctgggc
      241 ggaaaggagc ggcgggccgc cgaaagcgcc ggctctgtga tgcaggctcc ggggacagct
      301 gcagcagcag tgatgaaggc agctctgtgg tccgcccgga gaagaagcaa gcgacccaca
      361 atccgatgat ccagaagacg cgtggcagcg ctaaacagaa ggcaacctat ggcggcttga
      421 gtagcgagga cgagaatgaa ccggagggtc tcggcgtcgt ctacaagtct acccgttcgg
      481 caaaacccgt ggggcccgag gatatggggg cgaccgccgt ctacgaactg gacactgaga
      541 aggatcgaga tgcacagtcc atctttgagc ggagccagaa gatccaggag gagctgaggg
      601 gcaaggaaga tgacaagatc tatcggggaa tcaataatta tcagaagtac gtgaagccca
      661 aggatacatc catgggcaat gcttcctccg ggatggtgag gaaaggccct atccgagctc
      721 ctgagcatct acgtgccacc gtgcgctggg attaccagcc cgatatctgt aaggactaca
      781 aggagactgg tttctgcggc ttcggggaca gctgcaaatt cctccatgat cgttcagatt
      841 acaagcacgg gtggcagatc gaacgtgagc ttgatgaggg tcgctatggt gtctatgagg
      901 acgaaaacta cgaagtggga agcgatgatg aggaaatacc attcaagtgt ttcatctgtc
      961 gccagacctt ccaaaatcca gttgtcacca agtgtaggca ttatttctgc gagcgctgtg
     1021 cattgcagca tttccgtacc acctcacgct gctatgtctg tgaccagcag accaatggcg
     1081 tctttaatcc agccaaagaa ctgattgcta aactgggaaa gcatcgagct gaagcagagg
     1141 gtggtgtttc tgattctcta gaagacatag aggagagtcc agtttccatt atttagactt
     1201 tccataattc tcagtctcaa aataaatgtt ttgttgtttc ttaaaa
//
