LOCUS       XM_006527921            8098 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ring finger protein, LIM domain interacting
            (Rlim), transcript variant X3, mRNA.
ACCESSION   XM_006527921
VERSION     XM_006527921.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006527921.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8098
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..8098
                     /gene="Rlim"
                     /gene_synonym="Ha1r; Rlim1; Rnf12"
                     /note="ring finger protein, LIM domain interacting;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 8 ESTs, 2829 long SRA reads, 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19820"
                     /db_xref="MGI:MGI:1342291"
     CDS             970..2772
                     /gene="Rlim"
                     /gene_synonym="Ha1r; Rlim1; Rnf12"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RLIM isoform X1"
                     /protein_id="XP_006527984.1"
                     /db_xref="GeneID:19820"
                     /db_xref="MGI:MGI:1342291"
                     /translation="MENSDSNDKGSDQSAAQRRSQMDRLDREEAFYQFVNNLSEEDYR
                     LMRDNNLLGTPGESTEEELLRRLQQIKEGPPPQSPDENRAGESSDDVTNSDSIIDWLN
                     SVRQTGNTTRSGQRGNQSWRAVSRTNPNSGDFRFSLEINVNRNNGSQTSENESEPSTR
                     RLSVENMESSSQRQMENSASESASARPSRAERNSAEAVTEVPTTRAQRRARSRSPEHR
                     RTRARAERSRSPLQPTSEIPRRAPTLEQSSENEPEGSSRTRHHVTLRQQISGPELLGR
                     GLFAASGSRNPSQGTSSSDTGSNSESSGSGQRPPTIVLDLQVRRVRPGEYRQRDSIAS
                     RTRSRSQAPNNTVTYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRILNTGLSETTS
                     VAIQTMLRQIMTGFGELSYFMYSDSDSEPSASVSSRNVERVESRNGRGSSGGGNSSGS
                     SSSSSPSPSSSGESSESSSEMFEGSSEGGSSGPSRRDGRHRAPVTFDESGSLPFLSLA
                     QFFLLNEDDEDQPRGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSH
                     EYHVHCIDRWLSENSTCPICRRAVLSSGNRESVV"
ORIGIN      
        1 gacacccact acggcctccg gacctgggct cccggctgtg gggggctccg tggcgtagtc
       61 gccgctgcca ttttagttgg gtggcgtgtg tcggccccgc tcgtggaaga aggggaagga
      121 gtcgggcagg acttcctctc ccaggccgtg gagtcggggc ccggccctcc cgagctaaga
      181 acgaacgccg gggaggcgat cctggactcc gggcctcagg cgtgaggatg gctccagtgc
      241 ttcttactaa gaggttcccc ccacccccca tcgtcgtcgc cccgcgttgc gtatcgggct
      301 agggtttggg gaagtggggt ggaggtgctc ttaattcgga tgttgggaac tcttgaacct
      361 tcagattttc acaggattcg cagagcctca ttttgaacgc ttctgtaggg catgaccagt
      421 ttgttaacct ctggggctac ggtgacagtc ttccgggagg atcggagaca aacgtggttt
      481 gcttccctgc acctttagcc ctaagtgtat ccttggccag attttactag aagggttttc
      541 ctcctcacaa gaaaaaaaaa attaaaaaaa cggagggaaa agacgttgcg ggttgttttc
      601 cctggtaagt gtgggaattg agccagacta ttttcaagtt aatttccgtg tgatctgcca
      661 gcagccctac ccctccccca ctcagaaaaa aacccctaag ggtctctgct tctgcgggcg
      721 ggcggtacct gccacgtacg ccatagctta gtaactagta ttaaccggtt gggcttctgc
      781 ttcctgaata ctcagtccct ttcccccttc tgctgattaa tttcaagatg gaggagacag
      841 ccacgttctt ttcctggaca gtttcaccat acttattcca cagagctgag tgaagaagac
      901 taaaatccag tttattggat ttcaatacta tgtcctaaaa gacagataat tttccacttg
      961 atcaccaaga tggagaactc agattctaac gataaaggaa gtgaccagtc tgcagctcag
     1021 cgcagaagtc aaatggatcg cttggatcgg gaagaggctt tctatcaatt tgtgaataat
     1081 ctcagtgaag aagattatag acttatgaga gacaacaatt tgctgggcac cccaggtgaa
     1141 agtactgagg aagagttgct cagaagacta caacaaatta aagagggtcc accaccacag
     1201 agccccgatg aaaatagagc tggagagtct tcagatgatg tgaccaacag tgattctata
     1261 atagattggc ttaactcagt cagacagact ggaaatacaa caagaagtgg tcagagagga
     1321 aaccagtcct ggagagcagt gagccggact aatccaaaca gcggtgattt cagattcagt
     1381 ttagagataa atgttaaccg taacaatgga agccaaactt ccgagaatga aagtgaacca
     1441 tccactaggc gtcttagtgt agaaaacatg gagagcagca gccaaaggca aatggaaaat
     1501 tctgcatctg aatcagcatc ggccagacct tctcgagcgg agcgcaattc agctgaagca
     1561 gtaacagaag tgccgaccac cagagctcag aggagggcaa gaagccggag cccagagcat
     1621 cggagaacca gagcaagagc tgaaagaagc aggtcccctc tgcagccaac aagtgaaatt
     1681 ccacgaagag ctccgacctt ggagcagtct tcggaaaacg agcctgaagg aagttctaga
     1741 acccggcacc atgtgaccct gagacagcag atatctggac cggagttgtt aggtagaggt
     1801 ctttttgcag cttctggatc aagaaacccc tctcagggga caagctcttc agacacaggt
     1861 agcaatagtg aatcctcagg atctggccaa agacctccaa ccatagttct tgatcttcaa
     1921 gtaagaagag ttcgtcctgg agaataccgg cagagagata gtatagctag cagaactcga
     1981 tcaagatctc aggctccgaa caacacagtt acttatgaaa gtgaacgtgg aggttttagg
     2041 cgtacctttt cccgttctga acgtgcaggt gtgagaacct atgtgagtac tatcaggatt
     2101 cctattcgca gaatcttaaa tactggatta agtgaaacta catctgttgc aattcaaacc
     2161 atgttaaggc agataatgac aggctttggt gagctaagct actttatgta cagtgacagt
     2221 gattcagagc ctagtgcctc agtctccagc cgaaatgtgg agagagtaga gtcacggaat
     2281 ggaagaggga gctctggtgg cggtaacagc tctggttcca gttccagctc aagtcctagc
     2341 cccagttcaa gtggtgaaag ttccgagagt agctcagaga tgttcgaagg cagtagtgaa
     2401 ggaggctcgt ctggcccatc cagaagagat ggtcgacata gggccccagt cacatttgat
     2461 gaaagtggct ctctgccatt ccttagtctg gctcagtttt ttcttttaaa tgaagatgat
     2521 gaagaccaac ctagaggact cactaaagaa cagatcgata acttggcaat gagaagcttt
     2581 ggtgaaaatg atgcattgaa aacgtgtagt gtttgcatta cagaatacac agaaggcaac
     2641 aaacttcgta aactaccttg ctcccatgag taccacgtcc actgcatcga ccgctggttg
     2701 tctgagaatt ccacctgtcc catttgtcgc agggcagtct tatcttctgg gaacagagaa
     2761 agtgttgtgt gatgagacca gaactctgag ctgtgtagct ggaatagtga tgggcaaaca
     2821 aatcacctgc tttatgtcca cttttttttt tgagtggtgc ttaaaatata aagtcacaag
     2881 ctgaattgag tcattgcttt cttagggtat catgcctttt ctctagtttc tctttcagga
     2941 tggaaagaat attttaaaaa caacatttta ggacttaaac atttgatttc ggtaccagat
     3001 gaattgctaa cctgttactg ataatttacc catgtccact tgtcagtttt tcctttgttg
     3061 tcttaagggc cgccttagca gtggctcctt tctatattct atatcccatt gacctctttt
     3121 gaaagtttcc caggccataa gagaggcatg aagaaagtcc ccactcaaga ctaagttcca
     3181 ttctttgttt tgaaagtgat taactaaaac tataccattc ccagttattg acacaaattc
     3241 attcacattc tgaatattgt ttgttcacct tccagagtag gtgatgatgg acatatcagt
     3301 gtaaataaca ctaaacagtt aggatctttt aaatgtatta actgtcctaa gcccatcact
     3361 gtggcacaca atagagcgaa tttagagttt aattgagata tttatcttgt ggaaatatta
     3421 aaaagcctat gcttgtgtaa gtgaaaaaaa tcacattcat ttgtttaaaa atgtaaagct
     3481 attttgtaga ggctcagtac ttttccaatg cactgttgta ttaatgcatt caaaattgta
     3541 aagtaccatg cttagaaatg agaactgctt ttttgtgagc cagcatagta aaacaaacac
     3601 accaaacaaa gtacgaagct gcttttgtaa gtgtgtagat gtcaagagca gaacatatct
     3661 atatttagtg tatttgtgaa cagctactgt gacatgaaaa ggaaaggacc gtgcagaacc
     3721 cagctgcatt gaagaccaat ggagagcatg tattttaact tggatttagg caggaagtga
     3781 tacatgatgg tgaagaaaac ggccctgaag aatggaccat attcatgaag acagtaagta
     3841 atacagacgt gaactggatt cctacagtga gagccacagc agcccgaccc actgttctgt
     3901 ttgaatagat gaagcagaag atgagtacat ttggcagagc tttcttgggt gtttgaaaaa
     3961 gaagccacta ctacctagta caagttaaat tgatgtcttt acaatctgct cctcaaaaac
     4021 aagtagagga aagagactta agccaatttt aaagtaaggt tttcagttgg tacagatgtg
     4081 tgtgctattg gaaatgtctc ggatttgctt gtttgagacc ttctaaggta ccagtgcaca
     4141 cttagttgct tatttcactc ttatgtctag cagatctaat gggccacaaa gacctgttgt
     4201 gaattaagag atttttattt tttattgaaa ggaagtcatg ttgggttatt tgagattcaa
     4261 attttaattg tgttgccgta tttgaagata aggtggctgt ctcatatctg tgaacacgca
     4321 ctttattgtt gttttgtagg aagaatagat tgtgataacc ccagtactct tgcctcaggt
     4381 gggttttttt tttttttttg aggctgattg gggttaagat tagtttggct gtggagcaga
     4441 tctgtaaaat gtttctctct ggggaaagct aacaggccag aagagacctg gattgagcat
     4501 atacaatctt ggtctttaac caaatgagct aactacccag gttagtccag tactctagaa
     4561 aatgttttac acaaatctgc tttaggaatt acctgcttac cctcactgat attgccttag
     4621 cagtaaagat tatttcaaag tacattcttt catgttttct tctggctttc agtcctacct
     4681 aagtattaag gaaagtaaat tgtaaatatc gtagttgttt acaaaggata tgtactgctc
     4741 ttgcaaggaa ataatgtcca aacaaagctt cacttatttt ttttaataga agcatatttc
     4801 actgtttatg gcgcttatgt aatacatttt tatcttttta aaaagaattg tccatgtaaa
     4861 agtcagggtt cctttatatt tgtgagcctc cttgtcacct ttccctggtt ttcggatctg
     4921 caggatagtc ctggttaagt aaaaatacat cccgttttcc tcttgataaa atgttccatt
     4981 gtagagggat tcattttcta tagctcaaaa acagctgcag cacattctaa acacagtgat
     5041 ggacagcagg cacctcccta acctccccaa atgtattact catctctgaa gtattgaagt
     5101 tagagggaac tcaatcagga tactggttat gaatgtagat gttgaagcta ttcaaaaaca
     5161 ctggaagtca gtctttacat ttctagcctt gtttgatctg catgtggact atttcaagaa
     5221 gcactcgtag acattgggct gtctagaatg gatacaagta tttttagtgg gagttgcttt
     5281 ttttattttg gtgtccacag ctattctata ttactagttg cagctgttaa agatgaggtt
     5341 gttggtgtag gtgtcaggtg tgcaatgaag aacaggaatc ttggtttcct caccagtgtc
     5401 caaatgccta ttcttgaggg aacattttct tgcgaaagac tttacatttc gttttggatc
     5461 ttcgcacttt ttctttatta cagaaaggtt ctgtgtttaa gacctacttt gaacttcatg
     5521 cagtaatgtt gggggattac attgttcaaa gcatagggga aagtactaaa gcctgatttt
     5581 ccttgaattt ttaattgttt taatccactt actagtgtaa aggtttgcag tgttttattt
     5641 tattccacac agcttacaat gttgagattt attagtgctg aaaacaaaat ttaacatgtt
     5701 aagaatggca ggctgtttgt agtaaccatg cagaataagc tgtggtggga atttggaaca
     5761 ttttctctga aaaagaacat gttagttgca ctgccctgac ctccatataa atggaggtgg
     5821 ctttggtggg gagagggaga aggctcacat gctagtgttg gaacaggtaa ttgtcagttt
     5881 gataacaaaa ggttagtgcc aggagatgct cggtctctag ggcacagttg ttagactcca
     5941 tccaagctag ggaactggtt tgctctgtta ccttaagcaa tattttgctt tgtttttgtt
     6001 tttgtttttt tttctcctgg gaaaactttg tttctgttcc aagtattctc tgcttttatc
     6061 aatgtcttat agttatgaag ggttagcatt tagcacattt tgtatttaac cacctgcttc
     6121 tatgaatgag tctccagata accatgtgat aaagaggtct atgttacaaa atgactgtta
     6181 aaggccattt ctgacagttt gctagaatac agtggcacct tgtggttgac ttttttttta
     6241 acagatggag gatagttctt ttgtgaaagg aaataatttg taatctgcct tagctgattt
     6301 aatgtttttt cttactggct tccgtgtcac acgtcttaac caaaaatata cagtacctgg
     6361 aagccatgtt gcagggcact tagattcttg gctaatctaa gatttttcac tctctggaag
     6421 tattctttct atacctgtgt aacgaggtgg agaaggcaca tgtgaaggtg tttctttttc
     6481 ccctttagta cagttcaata tgtctaatgc acagtaacag tgttgttatt gagttaacta
     6541 gtaaatggtt cttctaaaaa atttttttaa gtgtatgttg atgtatcatg ggaagttaaa
     6601 gtgcaagatc tggggaaaga atatttttaa gttcagttta ataaaaacag ttgtgagctc
     6661 aatcaatagc caccctttaa attttttagc attgagttac ctttcttgag gtaagatctt
     6721 gctgtgtgct cacagctggc ctggaactct gtggaccagg ctggctttag atttgtggca
     6781 gtccttgtgc ctctgcctct ttcttgaatg ttaggaatgc aggtacttag cactcaaatt
     6841 caccttcatt ggaacatttc taaaatacta tccaacactc caggaagtgg cctcctgtaa
     6901 gtcgccatag tttgtatcta aaagcccaca gcttagaata gaactaccgg ggtttttgtt
     6961 ttttgttttt ttttaagtat caggtttatg attttttttt catgtccatg tagatgtctg
     7021 gattcaaatc ttaaaaaggt taccaaccac tcaaaattac agtgagatac atgggacaat
     7081 ttgctttggg tattttgaga gggtcttgtt ttgtagccca ggctggcctg gaattagtga
     7141 tcctcctgat gactgggatt atagttatgt gtcaccccaa cccagcaagg atttgtttac
     7201 tgaagtccca cagctgcttt ataatcattt gggaaagcag ctagagatgc gcagtgaaag
     7261 tgaaccctgt catacatacc actgtgcctt gtttcaaggt ctgtcttagt tctcattctc
     7321 aagattgttt ccagttgcaa gttagaggca agccagctag ctgcccagcc ttaactctgt
     7381 tcagtgccct gttactaaca ttttttaaca gattggtttc tacatgttta aagtatccag
     7441 cgttggattt tacctcttgc tagttccatt tgtccctggt gctgctttta aaggtatagg
     7501 gccctgtgaa gtgtccagtg gagtaggtac gcagttggcc tggttatatg gaaaagctgc
     7561 tttggaatag atgtttactt gggttcctgt gcagaactgg gcagcaatcc tggaaagctc
     7621 tgtaaagccc ataagaaagg atttgaagag ggctgcgctt aagtctttga acatgaagca
     7681 catgtgtgca tgctgtcaaa agactggagt gattgtcata ccagggcctg acctccagga
     7741 gacactttga aaaggcaaca gaggagcacc aagggaagtg aatttgcttg gcttgctttg
     7801 tctgctttct cgtttcctta ccatttgcac ctgaaagaaa cacccttctc cggtatctga
     7861 tccagcaaac ttggttggga aaccctgtgt tgaattttga gaatgtaccc aactttttgt
     7921 acagcgcttt acacctgcta aaatttacct tgtttaatgc agaaagagac cttgaaaggt
     7981 cagtcatgaa atctggtttg attattaata gctatctttt aggaagaagc tttttcccta
     8041 tgtacgatgt catactgcag acttaaaata tagactatca ataaaatgca tgaagtga
//
