LOCUS       XM_030253080            6331 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus rearranged L-myc fusion sequence (Rlf),
            transcript variant X2, mRNA.
ACCESSION   XM_030253080
VERSION     XM_030253080.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030253080.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6331
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..6331
                     /gene="Rlf"
                     /gene_synonym="9230110M18Rik; MommeD8"
                     /note="rearranged L-myc fusion sequence; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 508 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:109263"
                     /db_xref="MGI:MGI:1924705"
     CDS             751..5859
                     /gene="Rlf"
                     /gene_synonym="9230110M18Rik; MommeD8"
                     /codon_start=1
                     /product="zinc finger protein Rlf isoform X1"
                     /protein_id="XP_030108940.1"
                     /db_xref="GeneID:109263"
                     /db_xref="MGI:MGI:1924705"
                     /translation="MRIKHLLKSNCIPQATALSKLCAESKELAQVSCFQQAYITCLCS
                     MLPSEEAIQEIAKVDCKDVLDIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWEL
                     TLFWSKLQRRIDPSLETFLERCRQFGVIAKTQQHLFCLIRVIQTEAQDAGIGVSILLC
                     VRALQLRSSEDEEMKASVCKTISCLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYL
                     QPDQKFDEENAPVPNSLRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDSDD
                     DLSGYEMSINDTDVLESFLSDYDDGKEDKQYRRSLTDQNKEKRDKKPIGSSERYQRWL
                     QYKFFCLLCKRECIEARILHHSKMHMEDGIYTCPVCIKKFKRKELFVPHVMEHVKMPP
                     SRSHRSRKKLLLKSAQRGIYPKSPTGSLEQNPEQARGESHEYVTFSKLEDRRLQDRDL
                     YPCPGTDCSRVFKQFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCTYCRRHFMSAFH
                     LREHEQVHCGPQPYMCVSIDCYARFGSVNELLNHKQKHDDLRYKCELNGCNIVFSDLG
                     QLYHHEAQHFRDASYTCNVLGCKKFYYSKIEYQNHLSMHNVESPDGELKKSVKLEEPG
                     AGGKQDCVDQSHLLDETEKSHSLEDHHLCPGSASAHIDTTETLKDNSDSNSSDQLSHS
                     SSTSITEELIDTLDHSETMQDLLLSHEKVFVPSSLKDKCSNVAVCFDGTKFTCGFDGC
                     GSTYKNARGMQKHLRKVHPYHCKPRKIKTKDLFNCLDDKHNEADKFDAEPKPSSDTNS
                     DSPDEGPDHSIHTKCKREHQGYSPEPSICASKRPCTEDTMLELLLRLKHLSLKNSIAH
                     GSFSGSLQGCPSSGAKSLQSVPSSISDVNLQNQDENMPSQYLAQLAAKPFFCELQGCK
                     YEFVTREALLMHYLKKHNYSKEKVLQLTMFQHRYSPFRCHICQRSFTRKTHLRIHYKN
                     KHQIGSDRATHRLLDSEKCDHEGPCSVDRLKGDCSTELGPNSNSETTQCHSKKDECSS
                     ETDLESSCEETESKISGISSPIGSHREEGEEKEGRGSRRTVAKGNLCYILNKYHKPFH
                     CIHKTCNSSFTNLKGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKLFACKYKDC
                     NKRFLCSKALAKHCSDSHNLDHIEESKVLSETESAARFSCNQPQCPAVFYSFSKLKHH
                     LLEQHNIEGEIHSDYEIHCTLNGCGQIFSHRSNYFQHVYYRHKDYYDNLFSSQKVANE
                     RLLRSEKVCQTTQAQGLTQTQGQTQGQTQGQEQQAAKRPFNTKAKKCGLLKDKKAPIT
                     FKTRAEAIHMCVEHSEHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMNSAYLEQQLEN
                     LVVCVKYGTKIKDEPPSEVEPCVKKEESTSCESVHTENGAPGDSSVPLPNTDSTCPAE
                     QDVGQKGCSERNPVFDTHSLLYRGTLKCNHSSETTSLEQCNIAQSSPCKIESPIPNPS
                     GTESGTYFTDFQLPLPRIKEEPGQHSSGQENTVKNATQVPKENIRKHSQPRSFDLKTY
                     KPMGFESSFLKFIQESEEKDDDFDDWEPSEHLTLNNSSHPSNDLTGNVVADTIVNESA
                     PQVDIPHSSSDPPVSENLTAVPPLVVAEATAVPSLENLRVVLDKALTDCGELALKQLH
                     YLRPVVVLERSKFSTPILDLFPTKKTDELCVGSS"
ORIGIN      
        1 gggccgtggg aagatggcgg acggaaaggg agacgccacg gccgccgccg gggccggggc
       61 tggggctgag gctccggcgg tggcgggagc cgaagtcgag actgagtcca tggctcgggg
      121 tcatcgccct gcatctccgg cgtcgggagc gccgggccta cgaccgtgtc tctggcagct
      181 ggagaccgag ctgagggagc aggaggtgtc cgaggtctca tctttgagct actgccggag
      241 cttctgccag accttattgc aatatgcaag caacaagaat gcatcagaac acattgtgta
      301 tcttctggag gtataccgcc tcgctatcca aagctttgcc agcgcacgtc catttctaac
      361 tactgaatgt gaagatgttc tcttagtgct tggcagatta gtcctgagtt gttttgaatt
      421 actgctttca gtgtctgaaa gtgaactgcc ctgtgaagtc tgggtaccat tccttcagtc
      481 tctacaggag tcacatgatg cattgttgga atttggaaat aataatttac aaatactggt
      541 tcatgttaca aaagaaggag tgtggaaaaa ccccattctt cttaaaattc tgtcacaaca
      601 gccagtagag acagaggaag gactatctct caggtctttt ggtcgctgga acacactttg
      661 agaaatgcct gctttagagg aaacagcacc actggctttg gaatccttgt taacaaattg
      721 attgcacaag aaggaccttc ctttctacaa atgagaatca agcatttgtt gaagtctaac
      781 tgcatccccc aagctactgc tttatcaaaa ctgtgtgcag agtctaaaga acttgcccag
      841 gtgtcgtgtt ttcagcaagc ctatatcaca tgtttatgtt ccatgcttcc cagcgaagag
      901 gctattcagg agattgcaaa ggtggactgc aaggacgtgt tagacatcat atgtaatctg
      961 gaatctgagg gtcaggataa cacagcattt gttctttgta caacttacct tacccagcag
     1021 ctccaaacgg ccagtgtata ttgttcttgg gagctgactc tcttttggag taaactgcaa
     1081 agaagaattg acccatcttt ggagacattt ttggagcgtt gtcggcagtt tggtgtcata
     1141 gctaaaacac aacagcattt attttgcctg attagagtca tacagactga agcacaagat
     1201 gctggcattg gggtatcaat tttattatgt gtcagagctc ttcaactcag atcaagtgaa
     1261 gatgaggaaa tgaaagcttc ggtctgtaaa acaatttcct gtcttttacc agaagatttg
     1321 gaagtcagac gagcctgtca gcttacagaa ttcttaattg aacccagttt ggatggattc
     1381 aatatgctgg aagaactgta tttgcagcca gatcaaaaat ttgatgaaga aaacgcacca
     1441 gttccaaatt ccctgcggtg tgagctttta ctagctttaa aagcccattg gccctttgat
     1501 cctgaatttt gggactggaa aactttgaag cgacactgcc accaactcct gggacaagaa
     1561 gcctcagatt ccgatgatga cctaagtggc tatgaaatgt ctattaatga tacagatgtc
     1621 ttagagtcat ttctcagtga ctatgatgat ggaaaagaag ataagcaata tagaagaagt
     1681 ctaacagatc agaataagga gaaaagagac aaaaagccca ttggttcctc tgagagatac
     1741 cagaggtggc ttcagtataa gtttttctgt ttgttgtgta agcgggaatg catagaggcc
     1801 aggattctcc atcattccaa gatgcacatg gaagatggaa tatatacctg tccagtttgt
     1861 attaaaaaat tcaagagaaa agagctattt gttcctcacg taatggaaca tgttaaaatg
     1921 ccaccaagca gaagccaccg ttctagaaag aaattactat tgaaaagcgc tcaaaggggt
     1981 atttatccca agagtcctac tggaagtctg gaacaaaatc cagagcaagc caggggagag
     2041 tctcatgaat atgtcacatt tagcaagtta gaagaccgcc gcctgcaaga cagagacttg
     2101 tacccgtgtc cgggtacaga ttgttcccgt gtgttcaaac agtttaaata tttaagcgtg
     2161 catcttaaag ctgaacacca aaataatgac gaaaacgcca agcactactt ggatatgaaa
     2221 aataggagag agaagtgtac ttattgccgg cggcatttca tgtcagcttt tcacctccga
     2281 gaacatgagc aggtgcattg tggtcctcag ccttacatgt gtgtctctat agattgctat
     2341 gcaaggtttg ggtcagtgaa tgaactcctt aaccacaagc agaagcatga tgacctccgt
     2401 tacaaatgtg agttgaatgg ctgcaatatt gtgttcagtg acttgggcca gctttaccac
     2461 catgaagcac aacacttcag ggatgcatcc tacacatgca atgtccttgg ctgtaaaaag
     2521 ttctattatt ctaaaattga ataccagaac cacctctcca tgcataatgt tgaaagtcca
     2581 gatggagaat taaagaaatc agtgaaactt gaggaacctg gagcaggtgg gaagcaagat
     2641 tgtgtggacc agtcccatct acttgatgaa actgagaagt cccattctct tgaagatcac
     2701 catctctgtc cagggtcagc tagtgctcat atagacacca cagagaccct gaaggacaac
     2761 agcgacagca attctagtga tcagttaagt cacagctctt ccacgtcaat aactgaggag
     2821 ttaattgaca ccctagacca ctctgaaacc atgcaggacc tgttactgtc tcatgagaaa
     2881 gtctttgttc cctccagttt aaaagacaag tgctccaatg tggctgtttg ttttgatgga
     2941 actaaattca cctgtggttt tgacggctgt ggctccacct acaaaaacgc aagagggatg
     3001 cagaaacatc tgcggaaggt gcatccgtac cactgcaagc caagaaaaat aaagacaaaa
     3061 gacctcttta actgcctgga tgacaaacat aatgaagctg acaagtttga tgcagaacct
     3121 aaacctagct ctgatacaaa tagtgactcc ccagatgaag gtccagatca cagtatccac
     3181 acaaaatgca aacgagaaca tcaaggttat tcccctgaac cttccatttg tgcttctaaa
     3241 aggccatgta cagaggatac aatgttggaa cttctgttac gtttgaaaca tttaagcttg
     3301 aagaactcaa tagcacatgg ctctttctca gggtcattgc aagggtgccc atctagtggt
     3361 gctaagtctc ttcagtcagt cccatcttcc atttcagacg ttaatcttca gaatcaggat
     3421 gaaaatatgc caagtcagta ccttgcacag ttggcggcaa agcctttctt ctgtgagctt
     3481 caaggatgca aatatgagtt tgtgaccaga gaagctttgt taatgcatta tcttaaaaag
     3541 cataactatt caaaagagaa ggtccttcag ttaaccatgt ttcagcaccg atattcccca
     3601 ttccggtgtc acatctgcca aaggtcattt acaagaaaaa cacatcttag gattcattat
     3661 aaaaacaaac atcaaattgg cagtgacagg gcaactcaca gactgttaga cagtgaaaaa
     3721 tgtgatcatg aagggccatg ctcagtagac agactgaaag gtgactgctc tacagaactt
     3781 ggtcccaaca gtaattcaga gaccacgcaa tgtcattcta aaaaagatga atgcagctca
     3841 gaaacagact tggagtcctc ttgtgaggaa acagaaagta agatctctgg tatctcatca
     3901 ccaataggta gccatagaga agagggagag gagaaagagg ggagaggaag taggcggact
     3961 gttgctaaag gaaatctgtg ctatattttg aataagtacc acaaaccatt ccattgtatc
     4021 cacaaaactt gcaattcttc atttaccaat ctaaaaggcc tgattcgcca ttacagaact
     4081 gtgcatcagt acaacaaaga gcagttatgc ttagagaagg acaaagcaag aaccaaaagg
     4141 gagcttgtaa aatgtaaaaa gctatttgct tgcaaatata aagactgtaa caagcgcttc
     4201 ctgtgctcca aggccctggc taagcactgt agtgactctc ataacctaga ccacattgaa
     4261 gagtctaaag tgctttctga gacggagtct gcagcgaggt tttcttgtaa ccagcctcag
     4321 tgccctgctg ttttttattc attcagtaag ttgaaacacc acctgttgga acagcataat
     4381 attgaaggag aaatccattc ggattatgag atccattgta ctcttaatgg ctgtggccag
     4441 attttcagcc atcgaagtaa ttacttccag catgtctact accgacataa ggactattat
     4501 gacaacctgt tcagcagcca gaaagtagca aatgagcggc ttctaaggag tgaaaaggtg
     4561 tgtcagacaa ctcaggcaca aggactgacg cagacgcagg ggcagacaca gggacagacg
     4621 cagggacagg aacagcaggc tgccaaaagg ccatttaata ctaaagctaa aaaatgtggc
     4681 ttactcaaag ataaaaaagc tccaattacc tttaaaacaa gagcagaagc gatccatatg
     4741 tgtgttgagc attctgagca cacacagtac ccgtgcatgg ttcagggatg cttgtctgtg
     4801 gtgaagctgg aaagcagcat tgtgagacat tacaaacgta cccaccagat gaatagtgcc
     4861 tatttagagc agcagttgga gaaccttgtg gtttgtgtta agtatggtac caaaattaaa
     4921 gacgagcccc cttcagaagt agagccctgt gtaaagaaag aggaaagtac tagctgtgaa
     4981 tcggtgcaca cagagaatgg agccccagga gacagcagtg tgcccctccc aaacactgat
     5041 tctacttgcc cagctgaaca agatgtcggt cagaaagggt gttcagaaag aaacccagtt
     5101 tttgacacac acagtctgct ctacagggga actttgaaat gcaaccattc ttcagaaacc
     5161 acttctttgg aacagtgtaa tatagctcag tcttctccct gtaaaataga aagccccata
     5221 cctaatccca gtgggacaga aagtggtact tatttcacgg acttccagct gccattacca
     5281 aggatcaaag aagaacctgg gcagcatagt tcagggcaag aaaacactgt aaagaatgca
     5341 acccaggtcc caaaagagaa tattagaaag cattctcagc ccaggtcatt tgatctgaag
     5401 acttacaaac ctatgggatt tgagtcttcc tttctgaaat ttattcagga aagtgaagag
     5461 aaggatgatg attttgatga ctgggagcct tcagagcact taacattgaa taactcctct
     5521 caccccagta atgacttgac agggaatgtt gtggcagata ccatagtgaa tgagagtgcc
     5581 cctcaagttg acatacctca ttcttccagt gaccctccag tttcagagaa cctgactgca
     5641 gtcccaccat tagtagtagc tgaagcaaca gcagttcctt ccttggaaaa cctgagggtt
     5701 gtgctggaca aagcattaac agactgtgga gaacttgcct taaaacagct tcattacctt
     5761 cggcctgtgg ttgtccttga aagatctaag ttctctacac caattttaga cttgtttcca
     5821 actaagaaga cagatgagct ttgtgtagga agttcctgaa tcactgttgt ttttgaagca
     5881 cctagctcca gcactgcaac atggggacac ttgctaacgt gaacaaaggc tgggaatcag
     5941 ccacacttgc ttaggataga ataggctgtg tatgtacatg aatgtacaat atctgtgtca
     6001 gcagtattgg cggcgtccag tagctttcca gttggtttat tgattgggat ttttgtttgt
     6061 ttgtttgttt gtttattaaa aaaatggaac tgtactcttg tttggtgcta attaatacat
     6121 caaatatact ggggcttcct ttttccaatt aagtgtgcat gattgtatat ggaacatata
     6181 ttaaagtccc agggtgggag ggctagggaa agggtaggaa gttcttactt gacttgaatg
     6241 tgcacccaag ggtgctttgt gtaatatatt gtacactaca gcatcttata ttttttgagt
     6301 tgagtttcaa taaattacaa tttttcaccc a
//
