LOCUS       NM_001080708            3582 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Mus musculus RIPOR family member 3 (Ripor3), transcript variant 1,
            mRNA.
ACCESSION   NM_001080708 XM_149252 XM_911677 XM_984128
VERSION     NM_001080708.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK158217.1, BC130272.1 and AL928998.9.
            
            On Apr 25, 2018 this sequence version replaced NM_001080708.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC130272.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                AK158217.1         2-26
            26-2960             BC130272.1         1-2935
            2961-3017           AL928998.9         102563-102619       c
            3018-3268           AK158217.1         2936-3186
            3269-3269           AL928998.9         102311-102311       c
            3270-3582           AK158217.1         3188-3500
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 88.07 cM"
     gene            1..3582
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /note="RIPOR family member 3"
                     /db_xref="GeneID:69553"
                     /db_xref="MGI:MGI:1916803"
     exon            1..97
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            98..216
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..2923
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /note="family with sequence similarity 65, member C;
                     protein FAM65C"
                     /codon_start=1
                     /product="RIPOR family member 3"
                     /protein_id="NP_001074177.1"
                     /db_xref="CCDS:CCDS38341.1"
                     /db_xref="GeneID:69553"
                     /db_xref="MGI:MGI:1916803"
                     /translation="MSVRLRFLSQGDAGAVGTVGRSASFAGFSSAQSRRLSKSINRNS
                     VRSRLPAKSSKAYRTLRKGSLCLDPRPQQVKKIFDALKRGLREHLCEQQAELDYLCGR
                     HTDTQRGSRLAFYYDLDKQLRLVERHIRKVEFHISKVDELYEAYCIQWRLRDGASNMQ
                     RAFSNSTQSRASRESLQELGRSLQECLEDMCLIEGTLEGHLGEFQVKMKGLVGYARLC
                     PGDQYEVLMRLGRQRWRLKGRIEPDDSQTWDEEERVFVPTVHENLEIKVTELRGLSSM
                     VVGAVTCDVADFFMARPQLVVVDITELGTIKLQLELLWNPLDSECRLVSPSPTGRFSM
                     GSRKGSLYTWTPPSTPSFRDKYYLSLLQQPVQQSLLLGGPKATSILGYLSDSELQGPR
                     LRSRSQELLEMDSFSSEDPRDTETSTSASTSDVGFLPVPVGSAACTEEETREGPPPLG
                     LLPGLAHPARGVLVERPGWRDLGGERLALLQDAPIHSPMVPRSRKGQEDGDVGDGVEG
                     PVQEVLDLLRSADPAQPQLRELEYQVLGLRERLKPRGVQPEPVSAQSLMDCILESFAF
                     LNADLASDELSLFGGSQAPERDSPPPPRPSLKVSPSELTAGAPELDTLLTVHLQVCKA
                     LLQKLASPNLSRMVEDCLLEEAVQQRQVLEVLSDLDLEQVSKARSVEEIIPQASHRKG
                     GLALWQGCTQPGGVLACPASTLLSQLKKTFLHRVRGKYPGQLEIVCRRLLEQVVGCGG
                     LLVPAGLQEEQVVTWFQFHSYLQRQSISDLEKHLAQLTKEVTLIEELSCAGPAKALRK
                     LHGKCLSQLQPLPQTLQAWALLQLDGPPRLCRAARTRLASAARNKRFREKALLYYTNA
                     LNDSDAKVQQAACVALQQLGGIESCEQIVSLCQSDLEAVRVAAREATLSFGEKGRLAF
                     EKMDKLHSEQEAFCQEADVEITIF"
     exon            217..363
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            364..442
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            443..466
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            467..520
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            521..670
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            671..734
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            735..778
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            779..904
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1050
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1180
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1732
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            1733..1863
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            1864..1987
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            1988..2123
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2124..2285
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2286..2447
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2448..2650
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2651..2734
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2735..2825
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
     exon            2826..3582
                     /gene="Ripor3"
                     /gene_synonym="2310033K02Rik; Fam65c; Gm124"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggttttcagg gttccagcgg taccaggtgc caaccagagc cagtctgcag agggacagag
       61 agagaagacg ctggctcact cctgactgcc accaaaggtg acagccatgt ctgtgcggtt
      121 gcgcttcctg tctcaggggg atgccggggc tgtggggact gtgggccgca gtgcctcctt
      181 cgctggcttc agcagcgcac aaagccgaag gctctcaaag tccatcaaca ggaactctgt
      241 gcggtcccgg ctgccagcca agtcctccaa ggcctacaga acactgcgca agggttcgct
      301 atgcctggat ccccggccgc aacaagtgaa gaaaatcttt gacgctttga agagaggcct
      361 cagggaacat ctgtgtgagc agcaggctga actggactac ctgtgtggac gccacacgga
      421 cacccagagg ggctccaggc tggccttcta ctatgacctg gacaagcaac tgcgcctggt
      481 ggagagacac atccggaagg tggagttcca catcagcaag gtggacgaac tctatgaagc
      541 ttactgcatc cagtggcgtc tgcgagacgg agcctccaac atgcagcgcg ccttcagcaa
      601 cagcacgcag agcagagcct cccgggagag cctgcaggag ctgggccgaa gcttacagga
      661 gtgcctggag gacatgtgtc tcatagaggg gaccttggaa ggtcacctgg gcgagttcca
      721 agtcaagatg aaaggcctgg tgggctatgc acgcctctgt cccggagacc agtatgaggt
      781 gctcatgcgc ctgggccgtc agcgatggcg actgaagggc cggatagagc cagatgacag
      841 ccagacctgg gacgaagagg agagggtgtt tgtgcccacg gtgcacgaga acctggagat
      901 caaggtgacc gagcttcggg gcctgagctc gatggtggtg ggtgcggtga catgtgacgt
      961 cgcagacttc ttcatggccc ggccccagct tgtggtggtg gacatcaccg agttgggcac
     1021 catcaaactg cagctggagc tgctgtggaa ccccttggac tctgagtgcc gcctggtgtc
     1081 gcccagtccc actggcaggt tctccatggg cagcaggaag ggttccctat atacctggac
     1141 gccgcccagc acccccagct tccgggacaa atactacttg tctcttctcc agcagccagt
     1201 gcagcagtcc ttgctgctgg gtgggccaaa ggccacctcc atccttggct acctatctga
     1261 cagtgaactt cagggtcccc gcctgcggag ccggagccag gagctactag agatggattc
     1321 cttcagctct gaggacccca gagacactga gaccagtact tcggcatcca cttcagatgt
     1381 gggcttcctg cccgtgcctg tgggttccgc agcctgcaca gaagaggaga ccagggaggg
     1441 gcctccacct ctgggcctgc tgccaggcct ggctcaccca gccaggggtg tgcttgtaga
     1501 acggcccggc tggagggact tgggaggaga gaggctggcc ctgctgcagg acgcccccat
     1561 ccacagcccc atggtgccac ggagccggaa gggccaggag gatggagatg tgggggacgg
     1621 agtggagggg cctgtgcagg aggtcctgga cctgctgcgg tctgcagacc ctgcgcagcc
     1681 ccagctcagg gagctggagt accaagtcct tggcctcagg gagcggttga agccccgagg
     1741 ggtacagccg gaacccgtgt cggcgcagag cctgatggac tgtatccttg agagctttgc
     1801 ctttctgaat gccgaccttg ccagtgatga actgtccctg tttgggggct cccaggctcc
     1861 tgagagggac agccccccgc ctccacggcc atcactgaag gtgtcaccca gcgagctcac
     1921 agctggtgcc cccgagctgg acacgctgct cactgtccac cttcaagtct gcaaagcctt
     1981 gcttcagaaa ctggcttccc cgaatttgtc aaggatggtg gaggactgcc tcctagagga
     2041 agcagtgcag caaaggcagg ttctggaagt gctttcagac cttgaccttg agcaggtcag
     2101 caaggccagg tcggttgaag agatcatccc acaggcttct cacaggaagg gtggcctggc
     2161 actgtggcag gggtgcacgc agcctggtgg tgtcctggcc tgccctgcct ccacactcct
     2221 gagccagctc aagaagacat tcctgcatcg cgtccgaggg aagtaccctg gccagctgga
     2281 aatagtgtgt cgcaggctcc tggagcaagt ggtgggctgt ggtgggctgt tggtcccggc
     2341 agggcttcag gaagagcagg tggtcacctg gttccagttc cacagctacc tgcagcggca
     2401 gagcatctcc gacttggaga aacatctcgc tcagctcacc aaggaagtga ctctcattga
     2461 ggagttgagc tgtgcaggcc cagccaaggc cctgagaaag ctgcatggga agtgtctaag
     2521 ccagctgcag ccactgcccc agacacttca agcctgggca cttctgcagc tagatggacc
     2581 cccgaggctg tgcagggcgg ccagaacgcg cctagccagc gcggccagga acaagcgctt
     2641 ccgggaaaag gctctgctgt actacactaa tgccttaaat gacagtgacg ccaaggtcca
     2701 gcaggcggcg tgcgtggctc tgcagcagct tgggggtatt gaaagctgtg agcagattgt
     2761 cagtctgtgt cagtctgacc tggaggccgt gcgagttgca gcgcgggaag cgacactgtc
     2821 atttggtgag aaaggccgcc tggctttcga gaagatggac aaactccact cggaacaaga
     2881 ggccttctgt caggaagcgg acgttgaaat cacaattttt taagatgccg tgatcaacga
     2941 gctcaaatcg ggcgtctctc ttccttgagg ctgcttagcc tccacagtgc ccaggatttg
     3001 gatggagcag tctagccact cccttgcaag cctgggccgg tcaggatagt tacctgagct
     3061 tggggttggt gcccagccca gggaggagag tggtgtcttc acagagcagg tggaagtggt
     3121 gtgtgggggc cccccgaggc tgtggcctcc tacagacgcc gcttctgctt tcctggggtt
     3181 cagtgccagg gcagcctaca ctgcctgagg atcaaggggc cggggcaagg tgaggctcca
     3241 ggacagacac gcacggagtc cgagctccct gcacacccgc agctgggaca gaactggtct
     3301 gataaggcat ggcaggccca cctccagtgc atggcaccct ccggccattg gagggatact
     3361 ccagcgtgag tggaggcgag gttttccctg cggcggctat ggagacgcac gatgggtttc
     3421 ctacctaagt ggatagagca ctccaagctc ggggctctca gggctgactc ggtcacccca
     3481 ctcggagtcc cgtggaccat gcgtgctcac ttggtattta tttgtttcct tcatgtccat
     3541 ttcctgaaat ctcaattaaa agccctgtag cgtatggcca cc
//
