LOCUS       NM_025506                628 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus regulatory subunit of type II PKA R-subunit (RIIa)
            domain containing 1 (Riiad1), transcript variant 1, mRNA.
ACCESSION   NM_025506
VERSION     NM_025506.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 628)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 2310007A19Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK009192.1 and
            AK019569.1.
            
            On Sep 22, 2006 this sequence version replaced NM_025506.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009192.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN01164139
                                           [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-520               AK009192.1         3-522
            521-628             AK019569.1         331-438
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.71 cM"
     gene            1..628
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /note="regulatory subunit of type II PKA R-subunit (RIIa)
                     domain containing 1"
                     /db_xref="GeneID:66353"
                     /db_xref="MGI:MGI:1913603"
     exon            1..96
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     exon            97..165
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..461
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /note="isoform 1 is encoded by transcript variant 1; RIIa
                     domain-containing protein C1orf230 homolog; RIIa
                     domain-containing protein 1"
                     /codon_start=1
                     /product="RIIa domain-containing protein 1 isoform 1"
                     /protein_id="NP_079782.1"
                     /db_xref="CCDS:CCDS38535.1"
                     /db_xref="GeneID:66353"
                     /db_xref="MGI:MGI:1913603"
                     /translation="MECSASAPEGREEAWISFGKHNNRVCLMETRGHGIVGPDPGTLN
                     PEQLEQLRDFKIQTRIANEKYLRTHKEVSLLISGFFREMFLKRPDNILEFAAHYFTDP
                     RLPSRIHMQLIKEKKGT"
     exon            166..266
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     exon            267..343
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     exon            344..390
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     exon            391..517
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
     exon            518..628
                     /gene="Riiad1"
                     /gene_synonym="2310007A19Rik; Ncrna00166"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actagaaaaa caaatcttgc agccaattag tttcctttcc tttttaaatt cagttgaaag
       61 tgagagaaat aatttacaat ttatgaggag cctaagaaca gatggaatgc tcggcttctg
      121 cgccagaggg aagagaagaa gcctggattt ctttcggcaa gcacaacaac cgagtgtgct
      181 tgatggagac cagaggccat gggatagtgg ggccggatcc cggaacgctg aacccggagc
      241 aactggagca gttgcgagat ttcaagatcc agactcggat cgcaaatgaa aagtacttga
      301 gaacccacaa agaggtgtct ctgctcatca gcggcttctt cagagaaatg tttctgaaaa
      361 gaccggacaa cattcttgaa tttgctgcac actatttcac ggatccaaga cttcccagca
      421 gaattcacat gcagctaatt aaagagaaga aaggaaccta attagcaaag ccacaatgct
      481 cagctgctgg gagaagccag aaggaatcaa gctttggggt catctggagc cctgagagca
      541 gcattgccac cagtgtggat ttccaagctg tgtgggcctt ctcctatcag gggcctttaa
      601 gatactgatt aaacccagat ctgcctgc
//
