LOCUS       NM_201236                977 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus reproductive homeobox 4E (Rhox4e), mRNA.
ACCESSION   NM_201236 XM_109566
VERSION     NM_201236.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K,
            Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre
            A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt
            AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A,
            Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S,
            Wohnoutka P, Hawrylycz MJ, Puelles L and Jones AR.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   2  (bases 1 to 977)
  AUTHORS   MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and
            Wilkinson,M.F.
  TITLE     Rhox homeobox gene cluster: recent duplication of three family
            members
  JOURNAL   Genesis 44 (3), 122-129 (2006)
   PUBMED   16496311
REFERENCE   3  (bases 1 to 977)
  AUTHORS   Morris L, Gordon J and Blackburn CC.
  TITLE     Identification of a tandem duplicated array in the Rhox alpha locus
            on mouse chromosome X
  JOURNAL   Mamm Genome 17 (2), 178-187 (2006)
   PUBMED   16465597
REFERENCE   4  (bases 1 to 977)
  AUTHORS   Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML,
            Macleod C and Wilkinson MF.
  TITLE     Rhox: a new homeobox gene cluster
  JOURNAL   Cell 120 (3), 369-382 (2005)
   PUBMED   15707895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ972669.1.
            
            On Mar 7, 2006 this sequence version replaced NM_201236.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ972669.1, BC094891.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.86 cM"
     gene            1..977
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /note="reproductive homeobox 4E"
                     /db_xref="GeneID:194856"
                     /db_xref="MGI:MGI:3613390"
     exon            1..289
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /inference="alignment:Splign:2.1.0"
     CDS             223..840
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /codon_start=1
                     /product="reproductive homeobox 4E"
                     /protein_id="NP_957688.2"
                     /db_xref="CCDS:CCDS30078.1"
                     /db_xref="GeneID:194856"
                     /db_xref="MGI:MGI:3613390"
                     /translation="MEHQNTNYLLHEGLGKDKENLNGGKTQAVLPLDGEGRNEGESVL
                     GQSGAAAVEWDKAEELSGEGGPAAGDADLMDNSNQEDQDTSGSAQEEEKLPEEPVLRD
                     AVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQLQELERIFQQNHFIRAEERRH
                     LARWIGVSETRVKRWFKKRREHFRRGQSQLGMNDDAPVGSHSTFL"
     exon            290..695
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /inference="alignment:Splign:2.1.0"
     exon            696..741
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /inference="alignment:Splign:2.1.0"
     exon            742..977
                     /gene="Rhox4e"
                     /gene_synonym="Rhox4; Rhox4.5; Rhox4d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcttcctgg ttgcaaagct aggttttcgg ctctcagctt tcggctttcg gctttcggct
       61 ttcggctttc ggctttcggc tttcggcttt cggctttcgg ctttcggctt tcggctttcg
      121 gctttcggct ttcggctgtc ggctttcggc tttcggtttt cacaacctca ggaactccga
      181 ctcagaatct gctggggaaa gctgcaggga agcactcagg acatggagca tcaaaacacc
      241 aactacctac ttcatgaggg acttggcaag gacaaggaaa atttgaatgg tgggaagaca
      301 caggcagtct taccactgga tggagaggga agaaatgagg gagagagtgt actgggccag
      361 tccggagccg cagcagtgga atgggacaaa gcagaagaat taagtggaga aggtgggcct
      421 gctgctggtg atgcagacct catggataac agcaaccaag aggaccagga caccagtggc
      481 agtgcccagg aggaggagaa gctgccagag gagccagttc tcagggatgc tgtggtcata
      541 gacaaagtgc agcctattcc agtgctggta tctggtgtgc ggcctaagtc agtgtgggta
      601 cagcagcgta gcttacacta caatttccaa tggtggcagc tgcaggagct ggagcgcatt
      661 ttccagcaga atcacttcat ccgtgcagag gaaagaagac atctggcaag atggataggt
      721 gtgagtgaaa ccagagttaa gagatggttt aagaagagga gagagcactt cagaagagga
      781 caaagtcagt taggaatgaa tgatgatgcc cctgtggggt cccactctac ctttctctga
      841 agatggcaca ggaggcctgg tgtaccaccc ttgaccagga gccacgtgca gacccctgct
      901 gccttccacc agcatgttat tgcatctcta ttccctaagc atttgtatgt gaaataaata
      961 gattctcagt ttctttg
//
