LOCUS       XM_003688971             889 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus reproductive homeobox 4A2 (Rhox4a2),
            transcript variant X1, mRNA.
ACCESSION   XM_003688971
VERSION     XM_003688971.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 27, 2013 this sequence version replaced XM_003688971.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..889
                     /gene="Rhox4a2"
                     /note="reproductive homeobox 4A2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 3 long SRA reads, 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100861640"
                     /db_xref="MGI:MGI:5434453"
     CDS             134..751
                     /gene="Rhox4a2"
                     /codon_start=1
                     /product="rhox homeobox family member 1-like isoform X1"
                     /protein_id="XP_003689019.1"
                     /db_xref="GeneID:100861640"
                     /db_xref="MGI:MGI:5434453"
                     /translation="MEHQNTNYLLHEGLGKDKENLNGGKTQAVLPLDGEGRNEGESVL
                     GQSGAAAVEGDKAEELSGEGGPAAGDADLMDNSNQEDQDTSGSAQEEEKLPEEPVLKD
                     AVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQLQELERIFQQNHFIRAEERRH
                     LARWIGVSEARVKRWFKKRREHFRRGQSQLGMNDDASVGSHSTFL"
ORIGIN      
        1 tcagctttcg gctttcggct ttcggctttc ggctgtcagc tttcggctgt cggctttcag
       61 ctttcggttt tgacaacctc aggaactccg actcagaatc tgctggggaa agctgcaggg
      121 aagcactcag gacatggagc atcaaaacac caactaccta cttcatgagg gacttggcaa
      181 ggacaaggaa aatttgaatg gtgggaagac acaggcagtc ttaccactgg atggagaggg
      241 aagaaatgag ggagagagtg tactgggcca gtccggagcc gcagcagtgg aaggggacaa
      301 agcagaagaa ttaagtggag aaggtgggcc tgctgctggt gatgcagacc tcatggataa
      361 cagcaaccaa gaggaccagg acaccagtgg cagtgcccag gaggaggaga agctgccaga
      421 ggagccagtt ctcaaggatg ctgtggtcat agacaaagtg cagcctattc cagtgctggt
      481 atctggtgtg cggcctaagt cagtgtgggt acagcagcgt agcttacact acaatttcca
      541 atggtggcag ctgcaggagc tggagcgcat tttccagcag aatcacttca tccgtgcaga
      601 ggaaagaaga catctggcaa gatggatagg tgtgagtgaa gccagagtta agagatggtt
      661 taagaagagg agagagcact tcagaagagg acaaagtcag ttaggaatga atgatgacgc
      721 ctctgtgggg tcccactcta cctttctctg aagatggcac aggaggcctg gtgtaccacc
      781 cttgaccagg agccacgtgc agacccctgc tgccttccac cagcatgtta ttgcatctct
      841 attccctaag catttgtatg tgaaataaat agattctcag tttctttga
//
