LOCUS       NM_001039688             891 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus reproductive homeobox 4A (Rhox4a), mRNA.
ACCESSION   NM_001039688 XM_975797 XM_975830
VERSION     NM_001039688.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Daggag H, Svingen T, Western PS, van den Bergen JA, McClive PJ,
            Harley VR, Koopman P and Sinclair AH.
  TITLE     The rhox homeobox gene family shows sexually dimorphic and dynamic
            expression during mouse embryonic gonad development
  JOURNAL   Biol Reprod 79 (3), 468-474 (2008)
   PUBMED   18562707
REFERENCE   2  (bases 1 to 891)
  AUTHORS   MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and
            Wilkinson,M.F.
  TITLE     Rhox homeobox gene cluster: recent duplication of three family
            members
  JOURNAL   Genesis 44 (3), 122-129 (2006)
   PUBMED   16496311
REFERENCE   3  (bases 1 to 891)
  AUTHORS   Morris L, Gordon J and Blackburn CC.
  TITLE     Identification of a tandem duplicated array in the Rhox alpha locus
            on mouse chromosome X
  JOURNAL   Mamm Genome 17 (2), 178-187 (2006)
   PUBMED   16465597
REFERENCE   4  (bases 1 to 891)
  AUTHORS   Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML,
            Macleod C and Wilkinson MF.
  TITLE     Rhox: a new homeobox gene cluster
  JOURNAL   Cell 120 (3), 369-382 (2005)
   PUBMED   15707895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ972665.1.
            
            On May 28, 2010 this sequence version replaced NM_001039688.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ972665.1, BC057925.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.69 cM"
     gene            1..891
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /note="reproductive homeobox 4A"
                     /db_xref="GeneID:664609"
                     /db_xref="MGI:MGI:3580240"
     exon            1..203
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..754
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /codon_start=1
                     /product="reproductive homeobox 4A"
                     /protein_id="NP_001034777.1"
                     /db_xref="CCDS:CCDS40930.1"
                     /db_xref="GeneID:664609"
                     /db_xref="MGI:MGI:3580240"
                     /translation="MEHQNTNYLLHEGLGKDKENLNGGKTQAVLPLDGEGRNEGESVL
                     GQSGAAAVEGDKAEELSGEGGPAAGDADLMDNSNQEDQDTSGSAQEEEKLPEEPVLKD
                     AVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQLQELERIFQQNHFIRAEERRH
                     LARWIGVSEARVKRWFKKRREHFRRGQSQLGMNDDASVGSHSTFL"
     exon            204..609
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /inference="alignment:Splign:2.1.0"
     exon            610..655
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /inference="alignment:Splign:2.1.0"
     exon            656..891
                     /gene="Rhox4a"
                     /gene_synonym="Rhox4; Rhox4.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttcggctt tcggctttcg gctttcggct ttcggctgtc agctttcggc tgtcggcttt
       61 cagctttcgg ttttgacaac ctcaggaact ccgactcaga atctgctggg gaaagctgca
      121 gggaagcact caggacatgg agcatcaaaa caccaactac ctacttcatg agggacttgg
      181 caaggacaag gaaaatttga atggtgggaa gacacaggca gtcttaccac tggatggaga
      241 gggaagaaat gagggagaga gtgtactggg ccagtccgga gccgcagcag tggaagggga
      301 caaagcagaa gaattaagtg gagaaggtgg gcctgctgct ggtgatgcag acctcatgga
      361 taacagcaac caagaggacc aggacaccag tggcagtgcc caggaggagg agaagctgcc
      421 agaggagcca gttctcaagg atgctgtggt catagacaaa gtgcagccta ttccagtgct
      481 ggtatctggt gtgcggccta agtcagtgtg ggtacagcag cgtagcttac actacaattt
      541 ccaatggtgg cagctgcagg agctggagcg cattttccag cagaatcact tcatccgtgc
      601 agaggaaaga agacatctgg caagatggat aggtgtgagt gaagccagag ttaagagatg
      661 gtttaagaag aggagagagc acttcagaag aggacaaagt cagttaggaa tgaatgatga
      721 cgcctctgtg gggtcccact ctacctttct ctgaagatgg cacaggaggc ctggtgtacc
      781 acccttgacc aggagccacg tgcagacccc tgctgccttc caccagcatg ttattgcatc
      841 tctattccct aagcatttgt atgtgaaata aatagattct cagtttcttt g
//
