LOCUS       NM_001085356             779 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus reproductive homeobox 2F (Rhox2f), mRNA.
ACCESSION   NM_001085356 XM_001474373 XM_001474397
VERSION     NM_001085356.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and
            Wilkinson,M.F.
  TITLE     Rhox homeobox gene cluster: recent duplication of three family
            members
  JOURNAL   Genesis 44 (3), 122-129 (2006)
   PUBMED   16496311
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Morris L, Gordon J and Blackburn CC.
  TITLE     Identification of a tandem duplicated array in the Rhox alpha locus
            on mouse chromosome X
  JOURNAL   Mamm Genome 17 (2), 178-187 (2006)
   PUBMED   16465597
REFERENCE   3  (bases 1 to 779)
  AUTHORS   Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML,
            Macleod C and Wilkinson MF.
  TITLE     Rhox: a new homeobox gene cluster
  JOURNAL   Cell 120 (3), 369-382 (2005)
   PUBMED   15707895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL808133.17.
            
            On or before Mar 12, 2008 this sequence version replaced
            XM_001474373.1, XM_001474397.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.306338.1,
                                           SRR5189679.166969.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                AL808133.17        51219-51313
            96-507              AL808133.17        51476-51887
            508-553             AL808133.17        53433-53478
            554-779             AL808133.17        55732-55957
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.87 cM"
     gene            1..779
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /note="reproductive homeobox 2F"
                     /db_xref="GeneID:434764"
                     /db_xref="MGI:MGI:3770275"
     exon            1..95
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..604
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /codon_start=1
                     /product="reproductive homeobox 2F"
                     /protein_id="NP_001078825.1"
                     /db_xref="CCDS:CCDS53057.1"
                     /db_xref="GeneID:434764"
                     /db_xref="MGI:MGI:3770275"
                     /translation="MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRG
                     LPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDS
                     MGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEA
                     NRLARSMGVSEATVQEWFLKRREKYRSYKRL"
     exon            96..507
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /inference="alignment:Splign:2.1.0"
     exon            508..553
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /inference="alignment:Splign:2.1.0"
     exon            554..779
                     /gene="Rhox2f"
                     /gene_synonym="EG434764; Rhox2.6; Rhox2e"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaataaggac ttccacggct ttacagacat ggagcgtcaa agcatcaatt acctgcttga
       61 tgtgggacct gaggaggatg aggaaaatgc gaatggtgta aagactctga tggtcttgct
      121 ggctggagac ggaagaaacg agggagagag tggacggggc ctgcctgggt caggagcctc
      181 agcagcggaa ggatacagag caggagaaat aagtgcaggt gggcctgctg cgcaagtagc
      241 cgacctcatg gatgacagca accaagagga ccttggtgcc actgcctgtg accaggagaa
      301 ggagaagcag ccagaggagc cagtccctga ttccatggga gatttggaaa atgtaaagcg
      361 tgtgtccggg ccgtggtcca ctgttaatcc tgtgagagtg ttggtgccca aattccggca
      421 cctttggcga cacagcttca atgtgctgca actacaagag ctggagagca tcttccagtg
      481 caatcactac atcagcacta aggaggcaaa tcgcctggca agatccatgg gtgtgagtga
      541 agccacagtg caggaatggt ttttgaagag gagagaaaaa tacaggagtt ataagaggct
      601 gtaaatgctc agaggtcctc ttcctgcttc ccacagcatc tctctgtgaa ggctatggag
      661 aagccccagg gatccacgct tcctcaaggc gccatagcca gacgatgttt tcccgccaaa
      721 gtcctgttac aacacagtta tctcctcaat acttgtatta gcaataaaga gctgaattc
//
