LOCUS       NM_001081669             795 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus reproductive homeobox 2D (Rhox2d), mRNA.
ACCESSION   NM_001081669 XM_486653
VERSION     NM_001081669.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and
            Wilkinson,M.F.
  TITLE     Rhox homeobox gene cluster: recent duplication of three family
            members
  JOURNAL   Genesis 44 (3), 122-129 (2006)
   PUBMED   16496311
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Morris L, Gordon J and Blackburn CC.
  TITLE     Identification of a tandem duplicated array in the Rhox alpha locus
            on mouse chromosome X
  JOURNAL   Mamm Genome 17 (2), 178-187 (2006)
   PUBMED   16465597
REFERENCE   3  (bases 1 to 795)
  AUTHORS   Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML,
            Macleod C and Wilkinson MF.
  TITLE     Rhox: a new homeobox gene cluster
  JOURNAL   Cell 120 (3), 369-382 (2005)
   PUBMED   15707895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL954686.9.
            
            On Mar 20, 2007 this sequence version replaced NM_001081669.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164134,
                              SAMN01164142 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               AL954686.9         49253-49358
            107-518             AL954686.9         49522-49933
            519-564             AL954686.9         51490-51535
            565-795             AL954686.9         53328-53558
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.79 cM"
     gene            1..795
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /note="reproductive homeobox 2D"
                     /db_xref="GeneID:434760"
                     /db_xref="MGI:MGI:3648779"
     exon            1..106
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..615
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /note="reproductive homeobox 2C"
                     /codon_start=1
                     /product="reproductive homeobox 2D"
                     /protein_id="NP_001075138.2"
                     /db_xref="CCDS:CCDS40934.1"
                     /db_xref="GeneID:434760"
                     /db_xref="MGI:MGI:3648779"
                     /translation="MEQQSINYKLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGPG
                     LPGSGVSAAEGYRAGELSAGGLASPVADLMDKSNQEDLSATGCAQEKEKQPEEPVPDS
                     MGDLENVKPMSGPWSTVNPVRVLVPEFRYSWQQSFNVLQLQELESIFQCNQYISTTEA
                     KRLAKSMGVSEATVQEWFLKRREKYRSYKRL"
     exon            107..518
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /inference="alignment:Splign:2.1.0"
     exon            519..564
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /inference="alignment:Splign:2.1.0"
     exon            565..795
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      774..779
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
     polyA_site      794
                     /gene="Rhox2d"
                     /gene_synonym="EG434760; Rhox2.4; Rhox2c"
ORIGIN      
        1 ggtgtaacag tgaataacga cttccacggc tttacagaca tggagcaaca aagcatcaat
       61 tacaagcttg atgtgggacc tgaggaggat gaggaaaatg cgaatggtgt aaagactctg
      121 atggtgttgc tggctggaga gggaagaaac gagggagaga gtggaccggg cctgcctggg
      181 tcgggagtct cagcagcgga aggatacaga gcaggagaat taagtgcagg tgggcttgct
      241 tcgccagtag ccgacctcat ggataagagc aaccaagagg accttagtgc cactggctgt
      301 gcccaggaga aggagaagca gccagaggag ccagtccctg attccatggg ggatttggaa
      361 aatgtaaagc ctatgtcagg gccgtggtcc actgttaatc ctgtgagagt gttggtgccc
      421 gaattccgct acagttggca acagagcttc aatgtgctgc aactacaaga gctggagagc
      481 atcttccagt gcaatcaata catcagcact acagaggcaa aacgtctggc aaaatccatg
      541 ggtgtgagtg aagccacagt gcaggaatgg tttttgaaga ggagagagaa atacaggagt
      601 tataagaggc tgtaaaggct cagaggtcct cttcctgcat tccggagcat ctctctgtga
      661 aggctgtgga gaagccccag gcagccaccc atgctcaagt cactgtagac agatgatgtt
      721 gtgccgccaa agtcctgtta caacacagtt atcttcttaa tacttgtatt tgcaataaag
      781 agctgaattc tcaat
//
