LOCUS       XM_006505860            4429 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus rhodopsin (Rho), transcript variant X1,
            mRNA.
ACCESSION   XM_006505860
VERSION     XM_006505860.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 9, 2015 this sequence version replaced XM_006505860.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..4429
                     /gene="Rho"
                     /gene_synonym="Noerg1; Opn2; Ops; RP4"
                     /note="rhodopsin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 143 ESTs, 657
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:212541"
                     /db_xref="MGI:MGI:97914"
     CDS             78..1112
                     /gene="Rho"
                     /gene_synonym="Noerg1; Opn2; Ops; RP4"
                     /codon_start=1
                     /product="rhodopsin isoform X1"
                     /protein_id="XP_006505923.1"
                     /db_xref="GeneID:212541"
                     /db_xref="MGI:MGI:97914"
                     /translation="MDGADGTHSSDLSSVVRSPFEQPQYYLAEPWQFSMLAAYMFLLI
                     VLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG
                     PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVVFTWIMA
                     LACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFC
                     YGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIFFLICWLPYASVAFYIFTHQG
                     SNFGPIFMTLPAFFAKSSSIYNPVIYIMLNKQFRNCMLTTLCCGKNPLGDDDASATAS
                     KTETSQVAPA"
ORIGIN      
        1 gaacaaattc caattgaacg caacaaatag ttatcgagcc gctgagccgg ggggcggggg
       61 gtgtgagact ggaggcgatg gacggagctg acggcacaca cagctcagat ctgtcaagcg
      121 tggtgcggag ccccttcgag cagccgcagt actacctggc ggaaccatgg cagttctcca
      181 tgctggcagc gtacatgttc ctgctcatcg tgctgggctt ccccatcaac ttcctcacgc
      241 tctacgtcac cgtacagcac aagaagctgc gcacacccct caactacatc ctgctcaact
      301 tggccgtggc tgacctcttc atggtcttcg gaggattcac caccaccctc tacacatcac
      361 tccatggcta cttcgtcttt gggcccacag gctgtaatct cgagggcttc tttgccacac
      421 ttggaggtga aatcgccctg tggtccctgg tggtcctggc cattgagcgc tacgtggtgg
      481 tctgcaagcc gatgagcaac ttccgcttcg gggagaatca cgctatcatg ggtgtggtct
      541 tcacctggat catggcgttg gcctgtgctg ctcccccact cgttggctgg tccaggtaca
      601 tccctgaggg catgcaatgt tcatgcggga ttgactacta cacactcaag cctgaggtca
      661 acaacgaatc ctttgtcatc tacatgttcg tggtccactt caccattcct atgatcgtca
      721 tcttcttctg ctatgggcag ctggtcttca cagtcaagga ggcggctgcc cagcagcagg
      781 agtcagccac cactcagaag gcagagaagg aagtcacccg catggttatc atcatggtca
      841 tcttcttcct gatctgctgg cttccctacg ccagtgtggc cttctacatc ttcacccacc
      901 agggctccaa cttcggcccc atcttcatga ctctgccagc tttctttgct aagagctctt
      961 ccatctataa cccggtcatc tacatcatgt tgaacaagca gttccggaac tgtatgctca
     1021 ccacgctgtg ctgcggcaag aatccactgg gagatgacga cgcctctgcc accgcttcca
     1081 agacggagac cagccaggtg gctccagcct aagcctggcc agagactgtg gctgaaagta
     1141 ggagtctcct gtccccacac accccagcca cagcccccac caggagcagc acccgttggg
     1201 atgaggtcat gcaggctccc tcagtgttct tttctttgtt tttaatgaat tcatgaaagc
     1261 aaaatgaggc tccccactca atggggacag cttgacaaag ggcatccatc caccaagacc
     1321 atcctcaacc tggagtcccc aattcccggg gggccagcgg gatctgtacc cctccctcag
     1381 cttgtctatc aggaacatga caagtgtccc ggcttagggc taaatgtcta ggacagaatg
     1441 gaacacatag tagctgatta ataaatgcta gctggatgaa gggaggaatg agtgactgac
     1501 tgagtggata tatgagtgaa gggattaatg gaagggaaca tggatgtcct caggtgccca
     1561 acctggcaga tccagtcatg tctggctgga atctataagc agttttacat acctgccctg
     1621 gttttctctg cccccacccc caccccagtt ggatctccca aatccagggc cctgatagaa
     1681 tatggctgct tcaaagacag agagatgagg ggagggaggg gggagggaga gagggaggga
     1741 gggagacaca gagagggaat atgtgtgatg cgtgtgtatg tgtgtatgtg tgtgtgtaaa
     1801 cactttgtat ataaagagta cagctggtag ttatgttaca agtaacaccg actaatataa
     1861 ttaattaacc atcctaatgg tctctgcttg ttagtgactg cttgggaatt aggcagggcc
     1921 caagcactca gataaggtat ttccctcagc ctcagtaggc ttttgcaaat gacccaggcc
     1981 ttcaggcctg tgcagggcta gagctggatt acagagataa atgacagtga cagcaacgtg
     2041 agctgcagcc cttaggactg agaaagcatc gagaccaggg gtctccggca aggcctaggt
     2101 cctcccttca gtatggaaac cttgcctcat gtctctcagc ctccttggcc tgtggagatc
     2161 cagcccttcc tcttggcttc tggatacatt tgctcttcta caccagcaac caagtggcaa
     2221 cagttccagg ccagtatgga gttttagaag ccatgccaat atgcccacct tcagggagca
     2281 gctgagtcct tgatgccacc cttgttctga agagttcaga aacacagtgc aagacatgac
     2341 caggcctcat ccttaggatg ctcatggatc cagttcttag ctcccttgtt ggatatgctg
     2401 ttttccttgg cctttggtct tttctttatc ccagagggtt ttggctttaa ggccaacagg
     2461 aactatgggg taccagaatt gagcagcctc agtctgcatc cctcctctat agaaccacag
     2521 ctgggccctc agcaggccca actctgcatg gggacagagg cattaaaagc tcagctccta
     2581 cacttggtgg cagtggtggt ctgttgctct caagctcttt caaaatggat ggaaactggg
     2641 acgcttccct gacccctggt tatgaaagac tagactgtgt ggggacaaac agtccagagt
     2701 cccggggaat gtgatagagc agctccatca tttttagaaa cccaatttga ggcagtatag
     2761 agagatggtg acctctataa gcctctgtat ctgcaaagag gagcttagac ctgcccttga
     2821 ggggattata tgagatttaa gggacttatg tggccagcct acttcctggc atgctgaaga
     2881 cattggcaca ctctggtatt ctagaccttg gctcagagct gcctttacta ggatactgtc
     2941 acttagcaaa agaatgggat ggagcctcag atgtggagtg acaccatctt ccaagaagga
     3001 aagggtgcca gggtctggga tgaaagccct ttggtgctat gttgggcaag ggcgagtgcc
     3061 agcaaggggt tatttgcttg ctctctccat cagtgatgag gttccatttg gtcacaagaa
     3121 attcacccca attgctgaaa cagaggctga ctattggctt ataggcatga aaccccactc
     3181 ccctccactt caggctggct agattaaaag ctcagacctg tgaccccttg tgtctctctt
     3241 ctgtgttgac ttcactcaca ggcctaacct cagaggtgtc tgtagcagtc ccagggccag
     3301 acacccttcc agaaaggggc tttccttccc tttataatcg tggtgacagg tcagattctt
     3361 attgggcaga cctaagttac ctgattatcc ttaagccaat catcatgtct aagacagaga
     3421 ttcatttgat tggccagggc tgagtcactt gtttacctct aagtcaatca acaggcctga
     3481 gatggagagt catcttctga ttagctagac ctgggtcacc tgatcacctc taagccaacc
     3541 actatgtctg atatagggct ccctcatttg taatgtgttc ccacactaca agataaagtt
     3601 gactccacat agttaaggag cctgtaggat gtgttcccca aaagcaaaca ggggaacagg
     3661 atcaggacca gccctgaggg gtggggactg ggatgtgcta gacaaggctc cggggtgtca
     3721 tggatgaagg ggattccatg gctgccacac ctctggttgt ctctcatgct ttatgggcca
     3781 ggagtgcctg ttggaaggct actttagctg cctggccttg acctccctca ctcctccatg
     3841 cccagttcac ttgtcctgtg gggtgtcatc tttactcctg ccttctcctg cccgggaaaa
     3901 ataacccttt agaaccagaa tgctcttgtc agcctccctc gacagtcact gtgagtgtag
     3961 acagaagagc tcctgccatg agctgggacc tggagtcccc acagggtcac ctgccaggct
     4021 ccaagcaagc agcctttgtg gaacatacaa cacactcagc caatcacagg tcagacaggg
     4081 ctgtcacccc aataaagaga cacctgggtt accaggtaac ctgaggtgcc ccagagaaac
     4141 acagtgccag tcccagggta agtccctaga ctacacaggc cacagctctg agctgaaagt
     4201 gagagacacc ttagctggtg gaggctttat ttctgtattt gtttccaccc acggtcactt
     4261 tacctctgag aaacattgag ggtgacccca gatatatagg gaattaaata ggaacacaag
     4321 tcaaatatct actgataatc ataaagaaac ctaatgtgaa gtaagtcttt gatatatata
     4381 tgcaatttta caattgatta aagatgaaaa taaatttgca ttctaatga
//
