LOCUS       NM_001326585            1516 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RAD9-HUS1-RAD1 interacting nuclear orphan 1 (Rhno1),
            transcript variant 2, mRNA.
ACCESSION   NM_001326585
VERSION     NM_001326585.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Gu,N.H., Zhao,W.L., Wang,G.S. and Sun,F.
  TITLE     [RHNO1: A novel noncoding RNA highly expressed in the testis and
            involved in DNA double-strand break repair]
  JOURNAL   Zhonghua Nan Ke Xue 26 (5), 392-398 (2020)
   PUBMED   33354946
  REMARK    GeneRIF: [RHNO1: A novel noncoding RNA highly expressed in the
            testis and involved in DNA double-strand break repair].
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB841580.1, BE655013.1 and AC116573.7.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 3. All 4 variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146167.1, CV560266.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                BB841580.1         2-15
            15-465              BE655013.1         1-451
            466-1516            AC116573.7         137997-139047       c
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 62.97 cM"
     gene            1..1516
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /note="RAD9-HUS1-RAD1 interacting nuclear orphan 1"
                     /db_xref="GeneID:72440"
                     /db_xref="MGI:MGI:1915315"
     exon            1..73
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            74..322
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             158..865
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /codon_start=1
                     /product="RAD9, HUS1, RAD1-interacting nuclear orphan
                     protein 1"
                     /protein_id="NP_001313514.1"
                     /db_xref="CCDS:CCDS85164.1"
                     /db_xref="GeneID:72440"
                     /db_xref="MGI:MGI:1915315"
                     /translation="MPPKKRRRQSQKAQLLFHQQPLEGPKHHYESCQQPITHTVQVPS
                     KPIDQSTVTSWVSPQFDRAAESRFLIHRKPHRDQARRPTRRSTCKFPRLTFESPQSSS
                     SETLLLSNRVQPQNSEKDPPRRPLVPLFSPQSCGELSVHVPHSLPHVFAPPDIQTPDS
                     SVRDDPISPDQKENSFPSCILGPGTPSSPEPGPVLVKDTPEEKYGIKVTWRRRRHLFA
                     YLKEKGKLDGSQFLVKI"
     exon            323..1516
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1111..1116
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1156
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /note="major polyA site"
     regulatory      1175..1180
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1196
                     /gene="Rhno1"
                     /gene_synonym="2510047L19Rik; 5930416I19Rik"
ORIGIN      
        1 accggcttgt ctccgggttc cggccccgaa cgctcggtgt cctgaggagc ggcggccgcg
       61 gccgggaggg cgggcatggt ttgcaactgg atcctgaccc agaccaggaa ggcaacctgc
      121 atcatgtggt taccaactgc tcttcattta cctattgatg cctcccaaaa agagacgcag
      181 acagtcccag aaagcccagc tgctgtttca ccaacagcca ctggagggcc ccaaacacca
      241 ctatgaatct tgccagcagc ccattaccca cactgttcag gtgcccagca agcccattga
      301 tcagagcacc gtcacttcct gggtgtcacc ccagtttgat agagcagcgg aaagccggtt
      361 tctgatacac cggaagcctc accgagacca ggcaaggcgc ccaactcgga gatctacctg
      421 caagtttcca cgtctaacct ttgagagtcc acagtcttcc agttcagaga cgttgttgct
      481 atccaaccga gtgcagcccc agaactcaga aaaggaccca cccagaaggc ctttagtgcc
      541 attgttcagt ccccagagct gtggagaact gtcagtgcat gtacctcaca gtttacctca
      601 tgtgttcgca ccccctgaca tccagacccc agactcttct gtaagagacg atcccatttc
      661 cccagaccag aaggaaaaca gttttccaag ctgcatcctt ggccctggga ctcccagcag
      721 cccagagccg gggcctgttc tggtcaagga cacccctgag gagaagtatg ggattaaggt
      781 cacgtggaga cgcagaaggc acctgtttgc ctaccttaag gagaagggga agctggatgg
      841 aagccagttc cttgtgaaga tctgacagga ccgcagagct tcagttcttc ccggagctgc
      901 tgtggggagg tttcgcaagt catcctggtt tgaaaggatg aaaggggacg aacagcaata
      961 ggaagaccac ttagccagag tcggagttcg gtttctaggg ttccgcctcg caccaggaac
     1021 cgttgaattt agtgtcatga actgttggta tttttctcac attaactgtt tagacctctg
     1081 acgtttcttg tactgttcac agcgtttgta aataaatggc tgccgagttt ttagagaacc
     1141 cagccgttgt cagtaatgca gcctcgtgcc catctataaa aggtctatgc ttattagtct
     1201 tctgcctcga actaattcat ctcacgctgt tggtaccgag tgtgaggctc agcgactgga
     1261 gaaaatcaag agagagctct ggtttttaat ggttgacagc cttggctcaa agggtcccaa
     1321 gccaggcctg tgttggtgaa tacgatgggg tcagagagct aggggacgga tgagtacttt
     1381 aggtttgtgt tttgagatgt gtttacagtg gaagaaatat gacgctatca catgtggtgg
     1441 agaaatggat tcctatcagt aacttatcct atgtgtacat aaagtggaag ctcacactct
     1501 agtgtgggta gtgtgg
//
