LOCUS       NM_177815               2384 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus RFT1 homolog (Rft1), mRNA.
ACCESSION   NM_177815
VERSION     NM_177815.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Koscielny G, Yaikhom G, Iyer V, Meehan TF, Morgan H,
            Atienza-Herrero J, Blake A, Chen CK, Easty R, Di Fenza A, Fiegel T,
            Grifiths M, Horne A, Karp NA, Kurbatova N, Mason JC, Matthews P,
            Oakley DJ, Qazi A, Regnart J, Retha A, Santos LA, Sneddon DJ,
            Warren J, Westerberg H, Wilson RJ, Melvin DG, Smedley D, Brown SD,
            Flicek P, Skarnes WC, Mallon AM and Parkinson H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB652085.1 and BC082539.1.
            
            [WARNING] On Nov 28, 2023 this sequence was replaced by
            NM_177815.4.
            
            On Feb 16, 2006 this sequence version replaced NM_177815.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.175894.1,
                                           SRR1660819.48863.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BB652085.1         1-32
            33-864              BC082539.1         1-832
            865-2384            BC082539.1         840-2359
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 18.9 cM"
     gene            1..2384
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /note="RFT1 homolog"
                     /db_xref="GeneID:328370"
                     /db_xref="MGI:MGI:3607791"
     exon            1..101
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1664
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /codon_start=1
                     /product="protein RFT1 homolog"
                     /protein_id="NP_808483.2"
                     /db_xref="CCDS:CCDS26896.1"
                     /db_xref="GeneID:328370"
                     /db_xref="MGI:MGI:3607791"
                     /translation="MGSQEVLGQAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIV
                     GIVNVRLTLLYSTTTFLAREAFRRACLSGGAQRDWSQTLNLLWLTVPLGIFWSSCLGW
                     VWLQLLEVPDPDVVPYYGTGVLFFGLSAVVELLGEPFWVLAQAHMFVKLKVLAESMSV
                     ILRSVLTALLVLWLPHWGLYIFSLAQLLYTTVLVLCYAIYLIQLLRSPESAKQLTLPV
                     SRVTQLLPSISRSRAFVNWKEAGLAWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQG
                     VYDIVNNLGSLVARLIFQPVEESFYLFFAKVLEREKDASLQKQDDVAVAAAVLESLLK
                     LALLTGLTMTVFGFAYSQLALDIYGGAMLSSGSGPVLMRCYCLYVLLLAINGVTECFM
                     FAAMSKEEVDRYNFTMLALSSSFLVLSYLLTSWCGSVGFIMANCFNMGIRITQSLSFI
                     HHYFRESPHRPLAGLRLSPVLLGVFILSAGITSVSEAFLCCERGWPARLAHIAVGTIC
                     LGVTLGTAFLTETKLIHFLRTQLGRSRLSDKMT"
     exon            102..187
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            188..304
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            305..494
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            495..596
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            597..734
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            735..813
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            814..864
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            865..995
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1140
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1246
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1496
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..2372
                     /gene="Rft1"
                     /gene_synonym="D930025H04"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggccccgtt tcctcctcgg agctgtggct ctggggctat gggcagccag gaggtgctag
       61 gccaggcggc ccggttggcc tcctcgggtc tcctgctgca ggtcttgttt cgattaatca
      121 cctttgtctt gaatgcattt attcttcgat tcctgtcaaa ggagattgtg ggcatagtga
      181 atgtcagact aacgctgctt tactcaacca caaccttcct ggccagggag gccttccgaa
      241 gagcttgtct gagcgggggt gcccagcggg actggagtca gaccctcaac ctcctgtggc
      301 taactgtccc actgggtata ttttggtcct cctgcttggg ctgggtctgg ttgcagttgc
      361 ttgaagtgcc tgatccagat gtggtcccct actatggaac tggtgtgctg ttctttggtc
      421 tctcagcagt tgtggaactt ctgggagagc ctttctgggt cttggcacaa gcacatatgt
      481 ttgttaagct caaggttctt gctgagagca tgtcggtcat ccttaggagt gtcctgacgg
      541 ctcttcttgt cctgtggctg cctcactggg gtctgtacat cttttctttg gctcagcttc
      601 tctacacgac tgttctggtg ctctgctatg ccatctattt aatacaatta ctgcgttccc
      661 cagaatcagc caagcaacta actcttcctg tctccagagt aacacaactg ttgcccagta
      721 tttcaagaag cagagcattt gtcaactgga aggaggcagg attggcttgg agcttcttca
      781 aacagtcgtt cttgaagcag attttgacag aaggcgagcg gtacgtgatg acatttttga
      841 atgtgttaaa ctttggcgat cagggtgtat atgacatagt gaataatctt ggctcccttg
      901 tggccaggct aattttccag ccagtagagg agagttttta tttattcttt gctaaagtgc
      961 tagagagaga gaaggacgcc tcacttcaga agcaggacga tgttgctgtg gctgctgcgg
     1021 ttttggagtc cctcctcaag ctggccttgc tgactggact gaccatgact gtttttggct
     1081 ttgcctattc ccaactggct ttggacatct atggaggagc catgcttagt tcgggatctg
     1141 gccctgtgct gatgcgttgc tattgcctct atgtcctcct gcttgctatc aatggtgtga
     1201 ccgagtgttt catgtttgcc gccatgagca aagaggaggt tgacaggtac aatttcacca
     1261 tgctggcact gtcatcctcg tttttagtct tatcctacct gctgaccagt tggtgtggca
     1321 gtgtgggctt catcatggcc aactgcttta acatgggcat ccggatcaca cagagtcttt
     1381 ccttcatcca tcactacttc cgagagagcc ctcacagacc cctggctggc ctgcgcctgt
     1441 caccagttct tcttggggtg ttcattctca gtgctgggat tactagtgtc tcagaggcat
     1501 tcctctgctg tgagaggggc tggccagcta ggctggcaca catcgctgtg gggaccatct
     1561 gcttaggagt gactcttggg acagcgttcc tcacagagac caagctgatc cactttctca
     1621 ggactcagtt gggtagatcc agactcagtg acaaaatgac atgactttgg tgacgctttg
     1681 gcacttttgg tatctggacc cagcatagaa cggttcttgg acatgcgttg ttgtgggaaa
     1741 gccctgatgt ggagtcagga tcagcctgga ggagagacta cagaggacag atctccagtc
     1801 caaggcttcc caccaaagca ggagcgcctt ttcagtgaag accaaaaacc ctttttgtta
     1861 atgaactagt tccctttgag tgtgattgac ctttgaagtt acatctttta acaaactctc
     1921 ttaaatgtta atatttaacc attgtttggc caagaaaaag caatgcagcc attgacctgc
     1981 cgcaagaatg gttagtttct tctataaaag aagtaaggag cccctgaagt tatacaccaa
     2041 acaagaacaa atcatggtgt aaaaattgtg gctttcagcc gggtagtggt ggcacacacc
     2101 tttaatccca gcacttaaga gccagaggca gaggcagacg aatatccaag ttccaggaca
     2161 gccagagctg tctcaaaaaa acaaatataa aaaaataaaa atgtagctgg gcgtggtggc
     2221 gcttgccttt aatcccagca ctcgggaggc agaggtaggc ggatttctga gttcgaggcc
     2281 agcctggtct acaaagtaag ttccaggaca gccagggcta tacagaggaa ccctgtctcg
     2341 aaaaaccaaa aaataaaaat aattttaaaa aaaaaaaaaa aaaa
//
