LOCUS       NM_001417695            1378 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus replication factor C (activator 1) 3 (Rfc3),
            transcript variant 3, mRNA.
ACCESSION   NM_001417695 XM_030254789
VERSION     NM_001417695.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  AUTHORS   Gray,S., Santiago,E.R., Chappie,J.S. and Cohen,P.E.
  TITLE     Cyclin N-Terminal Domain-Containing-1 Coordinates Meiotic Crossover
            Formation with Cell-Cycle Progression in a Cyclin-Independent
            Manner
  JOURNAL   Cell Rep 32 (1), 107858 (2020)
   PUBMED   32640224
REFERENCE   3  (bases 1 to 1378)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   4  (bases 1 to 1378)
  AUTHORS   Gonzalez,J., Orlofsky,A. and Prystowsky,M.B.
  TITLE     A1 is a growth-permissive antiapoptotic factor mediating
            postactivation survival in T cells
  JOURNAL   Blood 101 (7), 2679-2685 (2003)
   PUBMED   12406903
  REMARK    GeneRIF: A1 is a growth-permissive antiapoptotic factor mediating
            postactivation survival in T cells.
REFERENCE   5  (bases 1 to 1378)
  AUTHORS   Bunz,F., Kobayashi,R. and Stillman,B.
  TITLE     cDNAs encoding the large subunit of human replication factor C
  JOURNAL   Proc Natl Acad Sci U S A 90 (23), 11014-11018 (1993)
   PUBMED   8248204
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC120011.16.
            
            On Mar 9, 2023 this sequence version replaced XM_030254789.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3691898.1,
                                           SRR17253013.802000.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-299               AC120011.16        79119-79417
            300-437             AC120011.16        80318-80455
            438-505             AC120011.16        82015-82082
            506-603             AC120011.16        82791-82888
            604-785             AC120011.16        84628-84809
            786-922             AC120011.16        85401-85537
            923-1021            AC120011.16        85616-85714
            1022-1091           AC120011.16        86547-86616
            1092-1378           AC120011.16        87224-87510
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 90.18 cM"
     gene            1..1378
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /note="replication factor C (activator 1) 3"
                     /db_xref="GeneID:69263"
                     /db_xref="MGI:MGI:1916513"
     exon            1..299
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            300..437
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             369..1283
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /note="isoform 3 is encoded by transcript variant 3;
                     replication factor C 3; replication factor C subunit 3;
                     RFC38; A1 38 kDa subunit; RF-C 38 kDa subunit; activator 1
                     subunit 3; activator 1 38 kDa subunit; replication factor
                     C 38 kDa subunit; replication factor C, 38 kDa"
                     /codon_start=1
                     /product="replication factor C subunit 3 isoform 3"
                     /protein_id="NP_001404624.1"
                     /db_xref="GeneID:69263"
                     /db_xref="MGI:MGI:1916513"
                     /translation="MCILRELYGIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVN
                     PSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEK
                     YMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLA
                     RRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQR
                     LLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKA
                     IYHLEAFVAKFMALYKKFMEDGLEGMMF"
     exon            438..505
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            506..603
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            604..785
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            786..922
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1021
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1091
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1378
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1352..1357
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /note="hexamer: AATAAA"
     polyA_site      1378
                     /gene="Rfc3"
                     /gene_synonym="2810416I22Rik; 38kDa; Recc3"
                     /note="major polyA site"
ORIGIN      
        1 gcgggaaaac tctactgtct aagcggcggg tccgctggtg cgactgtgga gcggtcatga
       61 gcctctgggt ggacaagtac cggccgagct cccttgcccg gctggactat cataaggaac
      121 aggcagcaca gctgcgcaac ctggtgagcc gccctgctca gcagcttcct gcacagcccg
      181 gggaagggaa gggaagggaa gggaagggaa gggaagggaa gggaagggag ggagggaggg
      241 aggaggcggg cgccccggtg ctagcgaggg ggtcagagtg acgcgttcct caaagtgcgg
      301 tgcagtgtgg agactttcct cacctcttag tatatggacc atcaggtgct ggaaaaaaga
      361 caagaattat gtgtattcta cgtgaacttt atggtatcgg ggtggaaaaa ctgagaattg
      421 agcatcagac tatcacaacc ccgtctaaaa aaaaaattga aatcagcacc attgcaagca
      481 actaccacct tgaagttaat cccagtgatg cggggaacag cgaccgagtt gtaattcagg
      541 agatgctgaa gacagtggcc cagtcacaac aacttgaaac cagctcacaa agagacttca
      601 aagtggtatt attgacagag gtggacaaac tcacaaagga tgctcagcat gccttacgca
      661 gaactatgga gaaatacatg tctacctgca ggctcatctt gtgctgcaat tccacatcca
      721 aggtgatacc cccgatccga agcaggtgcc tggcagttcg tgtgcctgct cccagcatcg
      781 aagatatttg cagtgtacta tccactgtct gcaggaagga aggtctggct ctcccttcga
      841 cattggcccg taggctggcc gagaagtcat gccgaaacct caggaaagcc ttacttatgt
      901 gtgaggcctg cagagtgcag caataccctt ttacggaaga ccaagaaatc ccagagacag
      961 actgggaggt gtatctgagg gagaccgcaa atgctattgt cagtcagcag acgccacaga
     1021 ggctccttga agtccgtgga aggctctatg agcttctaac tcattgtatt cctcctgaga
     1081 ttataatgaa gggcctcctc tcagaactcc tccataactg tgatgggcag ctgaaagggg
     1141 aagtggcaca gatggcagcc tactatgagc accgactaca gctgggcagc aaagccattt
     1201 atcatttgga agcatttgtg gcgaagttta tggcacttta taagaagttc atggaggatg
     1261 gactggaagg catgatgttc tgacagccag cagctcctcc aagcacaaca gatgccttgt
     1321 ttatataaat ttatcctggg actttgggta taataaacta gctttaccta gtaatgta
//
