LOCUS       NM_001370778            2501 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus RNA exonuclease 5 (Rexo5), transcript variant 3, mRNA.
ACCESSION   NM_001370778
VERSION     NM_001370778.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Silva S, Homolka D and Pillai RS.
  TITLE     Characterization of the mammalian RNA exonuclease 5/NEF-sp as a
            testis-specific nuclear 3' --> 5' exoribonuclease
  JOURNAL   RNA 23 (9), 1385-1392 (2017)
   PUBMED   28539487
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   McKee AE, Minet E, Stern C, Riahi S, Stiles CD and Silver PA.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164158.3 and AC122423.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                AC164158.3         52779-52868         c
            91-217              AC164158.3         52488-52614         c
            218-330             AC164158.3         47313-47425         c
            331-457             AC164158.3         45634-45760         c
            458-554             AC164158.3         44153-44249         c
            555-698             AC164158.3         41704-41847         c
            699-787             AC164158.3         28519-28607         c
            788-903             AC164158.3         27443-27558         c
            904-1042            AC164158.3         23096-23234         c
            1043-1137           AC164158.3         22851-22945         c
            1138-1240           AC164158.3         21352-21454         c
            1241-1314           AC164158.3         19614-19687         c
            1315-1429           AC164158.3         18784-18898         c
            1430-1534           AC164158.3         14215-14319         c
            1535-1672           AC164158.3         12589-12726         c
            1673-1765           AC164158.3         3656-3748           c
            1766-1982           AC164158.3         2926-3142           c
            1983-2170           AC164158.3         2544-2731           c
            2171-2289           AC164158.3         1489-1607           c
            2290-2501           AC122423.2         14012-14223         c
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 64.21 cM"
     gene            1..2501
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /note="RNA exonuclease 5"
                     /db_xref="GeneID:434234"
                     /db_xref="MGI:MGI:1919402"
     exon            1..90
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            91..217
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..2371
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /note="isoform 3 is encoded by transcript variant 3;
                     exonuclease NEF-sp"
                     /codon_start=1
                     /product="RNA exonuclease 5 isoform 3"
                     /protein_id="NP_001357707.1"
                     /db_xref="GeneID:434234"
                     /db_xref="MGI:MGI:1919402"
                     /translation="MEQEKEEANSRKRKEAPNSSASATERDGPPSHIQDREPQAKKAR
                     LSTILFTDNCEVTHRQLCELLKYAVLGKSAVPKPSWCQLSHQKQLNNVVVFILKGMSQ
                     LHFYRFYLEFRFLRKTFRHKFSLPSPTSSFLFDIIGLQKKKSARSFRRTVEGPLISAT
                     LRSSIDLQNDPIIQKYGYKNVGLTKCLLTKEEMKTFHFPLPGSPNYENFILTKYTGFI
                     TDSSPLFGLDCEVCLTSMGKELTRISLVTEGGYCLIDELVKPDLKILDYLTSFTGITK
                     EILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKMIHPYVIDTSLLYAGKQG
                     RRFKLTFLARVILGKDIQCPNKLGRDGIEDARAALELLQYFLKYGPKKIAEFNLEALA
                     ANQEQGDKEEAAHMSVLKCLESMGQKLLFLTQDINELSSYRNCQTIKCSSNKKVLEQA
                     RVEVPLFPFNIVEFSFQPFPPLFAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKV
                     FSSLGPVHSITLVLETYRPYFSIQYEVLEAAQLALETMNGSLLEGSCIRVRRLVTELT
                     LECDTLVRELEQDSENQGTIYVAGIGETFKEHLLEQSNLFPDLEAVILPKEVKSRKQK
                     NYCFLKFKTVNSAQVALEILKGKDWKLKGRNALTPRHLQAWLKDIHPEPAMPMGLRIV
                     PPLMERHIFRTRKVNHPKIVAWRWSRKIEKLYHSLSPGTFCLILMPGTKNAFGSHPGL
                     GLMKIKEEEESDTPGVRV"
     exon            218..330
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            331..457
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            458..554
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            555..698
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            699..787
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            788..903
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1042
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1137
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1240
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1314
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1429
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1430..1534
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1672
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..1765
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1766..1982
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1983..2170
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2171..2289
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2290..2501
                     /gene="Rexo5"
                     /gene_synonym="2610020H08Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggaccggg agcccctcgc tctgcgcacg acgcgcctca gggagcgctt taaacttcgc
       61 gacggcttaa attgaggaaa ggaggcgtag cctgatggag caagagaagg aggaggcgaa
      121 ctccaggaag aggaaggagg ccccgaactc ctcggcctcg gctacagagc gggatggacc
      181 tccttcgcat attcaggacc gcgagccaca agccaagaaa gctcgcttat ctaccatttt
      241 atttactgac aactgtgaag taacccatag acagctgtgt gagttgctga agtatgcagt
      301 tctgggtaaa tctgctgttc ctaaacccag ctggtgccag ctttcacacc aaaaacaact
      361 aaacaacgtg gtggttttta ttctgaaggg aatgagtcag ctacatttct acaggttcta
      421 tttggaattc agatttctcc gaaagacatt cagacataaa ttcagcttgc cttctccaac
      481 atctagtttt ctatttgata tcattgggct gcagaagaaa aaatcagcta gaagttttcg
      541 taggactgtc gaaggacctc taatttctgc cactttaaga tccagcatcg acctacagaa
      601 tgaccccatc attcaaaagt atggctataa gaacgtgggc ttgactaaat gccttctgac
      661 aaaggaagaa atgaaaacat ttcacttccc cttaccaggg tctcctaact atgaaaactt
      721 tatccttacc aagtatactg gtttcataac agatagcagt cccctctttg gacttgactg
      781 tgaagtgtgc cttacatcca tggggaaaga actaacacgc atctcactgg ttactgaagg
      841 aggctactgt cttatagatg aacttgtcaa gcctgatctc aagattctgg attaccttac
      901 cagttttaca ggaatcacga aggagattct taacccagtg acaacaaaac tcaaagatgt
      961 acagaagctg ttaagagaac tgcttcctcc tgatgctgtg ttagtgggcc attgcctaga
     1021 cttggatctc agagtattaa aaatgataca tccatatgtt attgatacct cattgcttta
     1081 tgctggaaaa caaggcagaa gatttaagct aacattctta gccagagtta ttttggggaa
     1141 ggatattcag tgtcctaaca agcttggccg ggatggcata gaagatgcta gagcagctct
     1201 tgagctgctt cagtattttc ttaagtacgg gccaaagaag attgcagagt tcaatctgga
     1261 ggcactagca gccaatcagg agcaaggaga caaggaagaa gctgcacata tgagtgtttt
     1321 aaaatgcctg gagtcaatgg gtcagaaact ccttttcttg acccaggata taaatgagct
     1381 ttcttcttat agaaattgtc aaactattaa atgctcttca aataaaaagg tgcttgagca
     1441 ggccagggtg gaagtccctt tgttcccctt caatattgtg gagttctctt ttcagccctt
     1501 tccacccctc ttcgctgagg agatgaaaaa cagtatgaag accaagtgga cacaaatgtc
     1561 aactgtctat gctgggccat ttagcaaaga ttgtaacgtc ggggctctga agaaggtgtt
     1621 tagtagcttg ggcccagtac actcaatcac tcttgttctt gaaacttaca ggccttactt
     1681 ctctatacaa tatgaagtcc tggaagctgc tcagctggct ctagagacca tgaatggcag
     1741 tctattagaa ggttcctgta tcagggtgcg caggcttgtg actgaactta cccttgagtg
     1801 tgacaccctt gtaagagagc tagagcaaga ttcggagaac caaggtacta tatatgtggc
     1861 tggaattggt gaaaccttta aagaacacct gttggagcag tccaacctct tccctgacct
     1921 ggaagctgtg atcctgccta aagaggttaa aagcagaaag caaaaaaact actgtttcct
     1981 gaagtttaaa actgtcaaca gtgcccaggt agcccttgaa attctcaaag gcaaagactg
     2041 gaagttgaaa ggcagaaatg ccctaacccc aaggcacctt caggcatggc tcaaggacat
     2101 acatcctgaa ccagcaatgc ctatggggct tcgaattgta cctcctctca tggagaggca
     2161 catcttcagg actcggaagg tgaaccaccc aaagatagta gcttggcgtt ggagccggaa
     2221 gattgaaaag ctctaccaca gcctgagccc aggcaccttc tgcctcatcc tgatgccagg
     2281 aaccaagaat gcttttgggt cgcaccctgg cctaggactg atgaaaataa aagaggaaga
     2341 agaaagtgat accccaggcg tgagagtgtg agtctctgca ctttccaagt gccatttcac
     2401 atgcaatgat ggcaagcctc tccctctttc agatagcttt gggataccct ctaaagtata
     2461 ttgtcatgtt caaaattcca ataaatgcct aaaactcaaa a
//
