LOCUS       NM_153793               1783 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RELT-like 2 (Rell2), mRNA.
ACCESSION   NM_153793
VERSION     NM_153793.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Manabe,R., Tsutsui,K., Yamada,T., Kimura,M., Nakano,I., Shimono,C.,
            Sanzen,N., Furutani,Y., Fukuda,T., Oguri,Y., Shimamoto,K.,
            Kiyozumi,D., Sato,Y., Sado,Y., Senoo,H., Yamashina,S., Fukuda,S.,
            Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and Sekiguchi,K.
  TITLE     Transcriptome-based systematic identification of extracellular
            matrix proteins
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 12849-12854 (2008)
   PUBMED   18757743
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY262749.1, AK044097.1 and BE945231.1.
            
            On Feb 5, 2010 this sequence version replaced NM_153793.1.
            
            CCDS Note: The coding region has been updated to represent an
            alternate splice variant that is more supported by the available
            transcript and protein data. The update removes two introns in the
            3' CDS and 3' UTR and changes and extends the C-terminus.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044097.1, SRR1660815.181082.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                BY262749.1         1-39
            40-1753             AK044097.1         3-1716
            1754-1783           BE945231.1         1-30                c
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.83 cM"
     gene            1..1783
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /note="RELT-like 2"
                     /db_xref="GeneID:225392"
                     /db_xref="MGI:MGI:1918044"
     exon            1..351
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            352..591
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     CDS             408..1319
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /codon_start=1
                     /product="RELT-like protein 2"
                     /protein_id="NP_722488.2"
                     /db_xref="CCDS:CCDS29195.2"
                     /db_xref="GeneID:225392"
                     /db_xref="MGI:MGI:1918044"
                     /translation="MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGY
                     RCRTSRGSEPDDAQLQPPEDDDVNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTV
                     QLSSVDATSSLQDGAPSHHHTVHLGSAAPCIHCSRSKRPPLVRQGRSKEGKSRPRPGE
                     TTVFSVGRFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQEPGGSQAAGGGQPRTGTAA
                     IERLLPEPPPSQAAATHSVQNGRLQDASLVPCTLEGTPGTSAELNLGPRGRDPSPGLS
                     SQEANGQPTKLDTSGQQESLPPEAGGM"
     exon            592..657
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            658..724
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            725..910
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1286
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1346
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1767
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1733..1738
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /note="hexamer: AATAAA"
     polyA_site      1754
                     /gene="Rell2"
                     /gene_synonym="4631403P03Rik; ependolin"
                     /note="major polyA site"
ORIGIN      
        1 gccccgcaca cctgcgctcc gccccttggt cctgggcccg caacgcgagt aggcatttgg
       61 gaacccagga cggtttcgga ggcgccctcc cccaacccct ctattttccc ggccggagta
      121 atccggagcc tgtcgcggtt ccctaccggc ccacatcctt ccctcccccc gtctgccgcg
      181 gaaccggtat ccgcagccac cagcccggag ccggtgaggc ggcaaagggg ggagggggag
      241 gaagcaaggg atgagctccg ggagggcgtc gggggccctg agccggacga ggacgcccct
      301 ggagccggga cccgaaccgg agccggagcc ggagacagaa ccaaaccacc gctgcagccc
      361 actaaaccca ggaggcgccc tggcccgcgc tcgcccccca gggcctcatg tcggaaccac
      421 agcctgacct ggagccgccc caacatgggc tgtacatgct cttcctgctt gtgctggtct
      481 tcttcctcat gggccttgta ggcttcatga tctgccacgt gctcaagaag aaaggctacc
      541 gctgccgcac gtctaggggc tcagagcctg atgatgccca gctccagccc cctgaagacg
      601 atgacgtgaa tgaggacaca gtagagcgga ttgttcgctg catcatccaa aatgaagcca
      661 atgctgaggc cttgaaggag atgctagggg acagtgaagg agaagggacg gtgcagctct
      721 ccagtgtgga tgccacctcc agcctgcagg acggagcccc ctcccatcat cacacagtgc
      781 accttggctc tgcagctcct tgcatccact gcagccgcag caagaggccc ccacttgtcc
      841 gtcagggtcg ctctaaggaa ggaaaaagcc gtcccagacc tggagagacc actgtttttt
      901 cagtgggcag attccgagta acacacattg agaagcgcta cggcctacat gaacatcgtg
      961 atggttcccc tacggacaga agctggggct ctggtggagg gcaggagcca gggggtagtc
     1021 aggcggctgg aggagggcag cctaggacag ggacagctgc cattgagagg ctgctccctg
     1081 agccgccacc ctcccaggcc gcagccaccc actcagtgca gaacggaaga ctccaggatg
     1141 ccagcctcgt cccttgtaca cttgagggga cccctggaac ctctgcagaa ctgaacttgg
     1201 gccctagagg gagagaccca agcccagggc tgtctagtca agaagcaaat ggacagccaa
     1261 ccaaactgga cacctcaggt cagcaggagt ctctaccacc agaagcaggg ggtatgtgag
     1321 ccaagtctcc ctgagctcca gatcagcctc agtcttcact gtgctgatgg gttaccagca
     1381 ggcattgcca ggggacggat agccaggaag gctctcccct ccactggaca gctctgcccc
     1441 tcagttgagg gaccaactct acttccatct ggagatacat ggtccccggc tgagagccct
     1501 caggaggagc ccctcccaat tcccagcccc tcattctgtt ccctttcccc acctgccaac
     1561 aggttgcctg gcctgccttc cccaaaacct cgctccacat gctagagcgt ggctgctggg
     1621 accaggccct accctcggtg ggcccctaaa gcaatagcac cttaggcccc ctgccatctt
     1681 ggcacaagag gcccaggccc tggcttggac ttcataccct ttattcactg tcaataaatc
     1741 cgctcagacc attacagttg ctctgcaaaa aaaaaaaaaa aaa
//
