LOCUS       XM_036164611            5263 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus RAB11 binding and LisH domain, coiled-coil
            and HEAT repeat containing (Relch), transcript variant X19, mRNA.
ACCESSION   XM_036164611
VERSION     XM_036164611.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5263
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..5263
                     /gene="Relch"
                     /gene_synonym="2310035C23Rik; 6430401N10; Kiaa1468;
                     mKIAA1468"
                     /note="RAB11 binding and LisH domain, coiled-coil and HEAT
                     repeat containing; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 21 ESTs, 885
                     long SRA reads, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 28 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:227446"
                     /db_xref="MGI:MGI:1922832"
     CDS             1282..3765
                     /gene="Relch"
                     /gene_synonym="2310035C23Rik; 6430401N10; Kiaa1468;
                     mKIAA1468"
                     /codon_start=1
                     /product="RAB11-binding protein RELCH isoform X16"
                     /protein_id="XP_036020504.1"
                     /db_xref="GeneID:227446"
                     /db_xref="MGI:MGI:1922832"
                     /translation="MDILKAEHFATPAVGDSVQPSLVWSSQKDSEDNRQSPAVNSSDQ
                     EKTKDVHLEIPDAADSFIPKENSSGSFPRKEREELPPSSVSNKTTLHFDQPNRKLSPA
                     FHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLI
                     LCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQ
                     CWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIK
                     SLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSH
                     LIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGE
                     VPHIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQL
                     LPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIA
                     GNGVLTKATVPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVEL
                     GANPAYHELLLTVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRVVPALITLSS
                     DPEISVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEVIRTFG
                     RVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKKLDIATHLFEAYSALSCCFISEDL
                     MVNHFLPGLRCLRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPPGSMSIAASLVS
                     EDTKTKFLNKMGQLTTSGAMLANVFQRKK"
ORIGIN      
        1 ctgcagagtc ggctactggt gcagcagcgg ctgagacggg aggtgctgct gcataccggg
       61 ctcctgcctc ccagtccggc ctaggctcta ggtgaggaga ggtgcggtcg gcctgggctg
      121 cctaggtggt cggcggctct cgggacctaa cggggattca ggctgagggc ctgtcgggcc
      181 aagcagggaa gcacccacat tcctgacaga ataagatggc ggcgatggcg cccggaggtg
      241 gtggcagtgg tagcggagta aatcctttcc tcagtgattc ggatgaggac gacgacgagg
      301 tagcggcaac cgaggaccgg cgggcaggac ttcggctggg tgccggggtc ggcctagatc
      361 ctggttctgc aggctccctg tcgccacagg accccatggc cctgggaagc agcgcgcggc
      421 cggggctcgc tgtggagatg tccgccgccc cggcggctcc ggggggcagc ggggagaccc
      481 ctgcccgatt gtcaatcgat gccatcgccg ctcagctgtt gcgcgatcaa tacttgctga
      541 ccgccctgga gctgcacacc gagctgttgg agagcggccg cgagctacca cgactgcgcg
      601 attacttctc caatcctggc aacttcgaga ggcagagtgg gaccccccca gggatggggg
      661 cgcccgggat ccctggcgcc tccatcgtcg gaggcgctgg aggtcgggaa ccgagtacga
      721 cgtcgggcgg aggacagctc aatcgagctg ggagcattag tactcttgac tcattagact
      781 ttgcaagata ttcagatgat ggtaacaggg aaacagatga aagagtggcg gtcctggagt
      841 ttgaactacg gaaagccaag gagaccattc aggccctccg agccaaccta acaaaggctg
      901 cagaacatga agttccttta caggaacgaa aaaattataa atcaagtcct gaaattcagg
      961 agccaatcaa acctcttgaa aagagagctc tcaacttcct agtcaatgag tttttgttaa
     1021 agaataacta caagcttaca tcaataacct tttcagatga aaatgatgat caggattttg
     1081 aattatggga tgatgtagga ttaaacattc ccaaaccccc agacttgtta caactttacc
     1141 gagactttgg aaatcatcaa gtgactggga aagatcttgt ggatgtggcc agtggagtag
     1201 atgaagatga attagaggct cttacaccaa ttttaggcaa cgtccctcca acccttgata
     1261 ctcccctgcc tatagagtga gatggacatc ctcaaagctg aacactttgc caccccagca
     1321 gttggtgatt ctgttcagcc ttccttggtt tggtcttccc aaaaggattc tgaagacaat
     1381 agacaaagcc cagctgtaaa tagttcagac caggaaaaaa ccaaggatgt tcatcttgaa
     1441 ataccagatg cagctgattc ctttattcct aaagagaatt cgtcaggttc tttccccagg
     1501 aaggaaagag aagagctgcc accttcttct gtatcaaata aaaccacgct ccatttcgat
     1561 cagcccaata ggaaattgtc acctgctttc caccaagcac tactctcttt ttgtcgaatg
     1621 tcagcagata gtcggttagg atcagaggtg tctaggattg cagacagtga aaaaagtgtt
     1681 atgttaatgc tgggacgctg cctgccacac attgttccta atgtgctgtt ggcaaaaaga
     1741 gaggagttga ttcctctcat attgtgtaca gcatgcctgc accctgaacc taaagaaaga
     1801 gaccagctcc tccatatcct cttcaacctg atcaagaggc cagatgatga gcaaaggcaa
     1861 atgatactga caggatgtgt ggcatttgca cgtcatgttg gaccaacacg tgtggaggct
     1921 gaacttttac ctcagtgttg ggaacagatt aatcacaaat atccagaaag acgactgctc
     1981 gtggcagagt cctgtggagc attggcacct taccttccta aagaaatccg tagttccctg
     2041 gttctttcaa tgttgcaaca gatgttaatg gaagataagg ctgatttggt aagagaagct
     2101 gtgattaaaa gcctgggtat cattatgggc tacattgatg atcctgacaa atatcaacag
     2161 ggctttgaat tgttgctctc tgccctgggt gatccctcag aaagagttgt tagtgcaaca
     2221 caccaagtat ttttaccagc ctatgctgcc tggacaactg aacttggaaa cttacagtct
     2281 catcttatac ctacactact gaacaagatt gaaaagcttc tcagggaagg agagcacggg
     2341 ctggacgaac acaagctcca catgtatctt tctgccttgc agtccttgat cccatctctc
     2401 tttgcattag tgctacagaa cgcacctttc tccagcaaag ccaagctgca tggtgaagta
     2461 ccacatattg aagtgactag gttccctcgg cctatgtcac ctctgcaaga tgtgtctact
     2521 attattggaa gtcgtgagca attggcagtg ctactacaac tttatgatta ccaactggaa
     2581 catgaaggca caacaggctg ggagagttta ctctgggttg tcaatcaatt gttgccacag
     2641 cttatagaaa tagtgggcaa aattaatgta acctcaactg cctgtgtcca tgaattctcc
     2701 agatttttct ggcgtctttg ccggacattt ggcaaaattt ttacaaacac taaggtaaaa
     2761 ccccagttcc aagagatttt aagactctct gaagaaaata ttgcaggaaa tggggtcctc
     2821 actaaagcta ctgtccccat ttatgcaaca ggagtcctca cgtgttacat tcaggaagag
     2881 gaccgaaagc tgttagttgg cttcttggaa gatgtgatga cactgctttc actgtctcat
     2941 gctcctcttg acagcctgaa ggcttctttt gtggaacttg gtgcaaaccc ggcctatcat
     3001 gagctgctgc taactgttct gtggtatggt gttgttcata cttctgcact tgtcaggtgt
     3061 actgctgcta ggatgtttga gctgttggtg aagggggtga atgagactct ggtagctcag
     3121 agggttgttc ctgctctcat tactctctcc agtgaccctg aaatctctgt caggattgct
     3181 acaatcccag catttggcac tattatggaa acagttattc agagagagtt gctagaaaga
     3241 gtgaagatgc agttggcttc tttcctggaa gaccctcagt accaagacca gcattctttg
     3301 catacagagg tcatccgaac atttggcaga gtcgggccta atgcagaacc ccggttccga
     3361 gatgagtttg ttataccaca tttacataaa ttagccttgg tgaacaactt acaaattgta
     3421 gattcgaaaa aactggacat tgcgactcat ctttttgaag cctacagtgc actctcctgt
     3481 tgtttcattt cagaggattt aatggtaaat cacttcttac ctggcctcag atgtttacgg
     3541 actgacatgg aacatctgtc tccagaacat gaggttattt taagttccat gataaaagaa
     3601 tgtgaacaaa aagtagaaaa caagactgtc caagagcctc caggctcaat gtcaattgct
     3661 gcaagtttag tgagtgaaga cacaaagacc aagtttttga acaaaatggg ccagttgaca
     3721 acatcaggtg ccatgctggc caatgtgttt cagagaaaga agtagaagcg ggaggcccgc
     3781 cccggtggac actaagatgg acctcaagta gactgctcct tgtacttgaa gcgcttacct
     3841 tttgatttcc tgactttatg ttcttgtgtt ataatgttat cctaacctcc aaagatattt
     3901 gcactgcttt taattattgc tgtgtatcta tttctttggg tattataact gtggtaatag
     3961 aaacttgatt taatggtctg taccaagtcc ctattctatg ttcttatttt tgagaataac
     4021 ttttatatat aatatatata tgtatagtga agaggggttt ttttgctttt gtttttttaa
     4081 tttttatttt tggatgggat attcacaaat atctgtatta tactctaagc tattacaatg
     4141 gtacttaaaa taatgtaaat ttgaagtcat tgttataaag taataaaagt ggaaattact
     4201 taagtattta aattatgaaa gaataatgca gactttttat tatttcttaa ctgactagaa
     4261 agagccacca gcattactct gtgccttttg gacttgagtt tgtatgttct gtaggaacta
     4321 catgcattcc tttcacacag tatttcaggc tgctgtggtg aatttgaatg gcagatccta
     4381 cagtcaatag ataatgatga gacttacaac atttcacatc tctcttgaga atcctttaag
     4441 tgctgtttag cctcccaaca catagatgca taggatggag ttccctgagg aaaacagcac
     4501 ttgagcatgg tgaggagtag ccagggtgaa tttcacaaca tttgtactag atttagatgc
     4561 tcaagaataa atgtactgag aagagttaat aattgtttat tcccaaattg aaatacacaa
     4621 gaaaatataa tttaagtctg aaatttaacg cctacttcct ataacacatt ttaggatgct
     4681 ttctgatgat ttaaactttg cagtttactt tttcatcctg tatgagaagt actaagtaag
     4741 tttaggacat ttggggttcc tttttccctt ctaaagtgaa agtgatgtta gttaagttat
     4801 tattggtttg ttgccacctg gtaccttaaa ctcggtggct attcccattg ctgtgtttta
     4861 tttgtatagt cttacgttga tagacagccc cactggaatt gaccaattgt ctacacagcg
     4921 acacagagtg ttgtgtatga aacggagtaa ctggcttaag gggttaatgt gaggccttac
     4981 acagttgacg catatacatg attctcatat ttattgtgta aattggcttt aatacacttg
     5041 gatcacattc acttcctgtg gaaaagctag ctttcccatg cagtcaaagc ttataaagtt
     5101 atttgcctta ggcaaagcca ttcatttctt ttacctatag tgaaattatt gaatagtagt
     5161 ttttctgaac tgttggattc taggcattcc tgagaaattg aaagtggcta cctttcatgt
     5221 caaaatgttg atctgttata aataaatgtt ttgcatactt gtt
//
