LOCUS       NM_025654               1111 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus RAD52 motif 1 (Rdm1), transcript variant 1, mRNA.
ACCESSION   NM_025654
VERSION     NM_025654.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Liu,X., Jiao,Y., Cao,Y., Deng,N., Ma,Y., Hasty,K.A., Kang,A.,
            Chen,H., Stuart,J.M. and Gu,W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Cheverud,J.M., Lawson,H.A., Bouckaert,K., Kossenkov,A.V.,
            Showe,L.C., Cort,L., Blankenhorn,E.P., Bedelbaeva,K.,
            Gourevitch,D., Zhang,Y. and Heber-Katz,E.
  TITLE     Fine-mapping quantitative trait loci affecting murine external ear
            tissue regeneration in the LG/J by SM/J advanced intercross line
  JOURNAL   Heredity (Edinb) 112 (5), 508-518 (2014)
   PUBMED   24569637
REFERENCE   3  (bases 1 to 1111)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1111)
  AUTHORS   Hamimes,S., Arakawa,H., Stasiak,A.Z., Kierzek,A.M., Hirano,S.,
            Yang,Y.G., Takata,M., Stasiak,A., Buerstedde,J.M. and Van Dyck,E.
  TITLE     RDM1, a novel RNA recognition motif (RRM)-containing protein
            involved in the cell response to cisplatin in vertebrates
  JOURNAL   J Biol Chem 280 (10), 9225-9235 (2005)
   PUBMED   15611051
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL590994.13.
            
            On Mar 10, 2023 this sequence version replaced NM_025654.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC055013.1, AK010457.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               AL590994.13        69451-69560
            111-290             AL590994.13        69769-69948
            291-413             AL590994.13        71734-71856
            414-573             AL590994.13        72316-72475
            574-672             AL590994.13        75298-75396
            673-758             AL590994.13        76284-76369
            759-1111            AL590994.13        77244-77596
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 65.48 cM"
     gene            1..1111
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /note="RAD52 motif 1"
                     /db_xref="GeneID:66599"
                     /db_xref="MGI:MGI:1913849"
     exon            1..110
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..860
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /note="RAD52B homolog; RAD52 homolog B"
                     /codon_start=1
                     /product="RAD52 motif-containing protein 1"
                     /protein_id="NP_079930.1"
                     /db_xref="CCDS:CCDS25477.1"
                     /db_xref="GeneID:66599"
                     /db_xref="MGI:MGI:1913849"
                     /translation="MAELISFVVPTQSDKVLLVWDLSTGPPAEALSHSLFTVFSQFGL
                     LYSVRVFPNAAVARPGFYAIIKFYSSRDAQRAQKACDGKPLFQTSPVKVRLGTRHKAL
                     QHQAFALNSSRCQELANYYFGFSGWSKRIIKLQELSGLEDAALAVPMQKGSPQFLCAV
                     EVVLPPYGCRSPGVGISEEPLRQLEEGQSSFLMKRKTAQKLAFQAAVSDAFQKLTIVV
                     LESGRIAVEYRPTAEDLDARSEEELQNLIQVSCSSWSQSSQREEECLSDFSLEEEDLK
                     LCDPH"
     exon            111..290
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     exon            291..413
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     exon            414..573
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     exon            574..672
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     exon            673..758
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     exon            759..1111
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1079..1084
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /note="hexamer: AATAAA"
     regulatory      1093..1098
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /note="hexamer: AACAAA"
     polyA_site      1098
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
                     /note="major polyA site"
     polyA_site      1111
                     /gene="Rdm1"
                     /gene_synonym="2410008M22Rik; Rad52b"
ORIGIN      
        1 gcactggctt taccatggcg gagttgatct ctttcgtagt tcccacccag agcgacaaag
       61 ttttgttggt gtgggatctg agcactgggc ccccagccga agccttaagt cattctctgt
      121 tcacagtgtt ctctcagttt ggccttctgt attcagtccg agtcttcccg aacgctgcag
      181 tggctcgtcc tggtttctac gccatcatca agttttactc ctcgcgggac gcacagagag
      241 cccagaaggc ttgcgatggg aaaccccttt ttcagacatc accagtgaag gttcgtcttg
      301 gaaccagaca caaggcactg cagcatcagg cctttgctct aaacagctca cgatgccagg
      361 aactggccaa ttactacttt ggcttcagtg gatggtcgaa aaggatcatc aagctgcagg
      421 agctctccgg actggaggat gcagctctcg ctgtgcccat gcagaagggg agcccccagt
      481 tcctctgcgc tgtagaggtg gtgctgcccc cctacggatg caggagccct ggggttggca
      541 tctctgagga gcctctgcgc cagctggagg aagggcagtc ctcgtttctt atgaagagga
      601 agacagctca gaagcttgcc ttccaggcgg ctgtatcaga tgccttccag aagctgacca
      661 tcgtggttct ggaaagtggc aggatcgcgg tggagtacag gcccacggcg gaggatctag
      721 atgccagaag tgaagaagag ctgcagaatt taatccaggt cagctgctcc tcttggagtc
      781 agtccagcca aagggaggaa gaatgtctct cggatttcag cctggaggag gaagacctga
      841 agctgtgtga tccgcactag cacctctgac cgtgtcaggt gacctgacct gccttctgac
      901 tttgacagga agttctgcgt gtccaatcag tgggttgctg ccctccctcc ctgagcatcc
      961 aagtgtgaag ccttgatctt gctgggcttt gtaggagggc tctgggggag aggtctaaag
     1021 gaggcttgag ccccgtcact aaggtggaaa aaggttcccc atgcaggcgt cccatcctaa
     1081 taaagactac gtaacaaagg tgtcttgtaa a
//
