LOCUS       NM_145424               1281 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RDH16 family member 2 (Rdh16f2), mRNA.
ACCESSION   NM_145424
VERSION     NM_145424.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1281)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1281)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1281)
  AUTHORS   Thiagarajan,R.D., Georgas,K.M., Rumballe,B.A., Lesieur,E.,
            Chiu,H.S., Taylor,D., Tang,D.T., Grimmond,S.M. and Little,M.H.
  TITLE     Identification of anchor genes during kidney development defines
            ontological relationships, molecular subcompartments and regulatory
            pathways
  JOURNAL   PLoS One 6 (2), e17286 (2011)
   PUBMED   21386911
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AY053572.1, AK144071.1 and AI099357.1.
            
            On Apr 10, 2009 this sequence version replaced NM_145424.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC018263.1, AK144071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AY053572.1         1-11
            12-1256             AK144071.1         1-1245
            1257-1281           AI099357.1         1-25                c
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 76.39 cM"
     gene            1..1281
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /note="RDH16 family member 2"
                     /db_xref="GeneID:216454"
                     /db_xref="MGI:MGI:3583955"
     exon            1..393
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..1037
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /codon_start=1
                     /product="cis-retinol/3alpha hydroxysterol short-chain
                     dehydrogenase-like"
                     /protein_id="NP_663399.2"
                     /db_xref="CCDS:CCDS24254.1"
                     /db_xref="GeneID:216454"
                     /db_xref="MGI:MGI:3583955"
                     /translation="MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNL
                     LARQLDRRGMRVLAACRKEEGAEELRRKTSERLETVILDVTKTENIVAATQWVKERVG
                     NRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVV
                     NVSSILGRVSLGGSGGYCISKYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSA
                     RLCSNIQMLWDQTSSEIREIYGEKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTAC
                     HPRTRYSAGWDAKLFFTPLSYLPTFLVDALLYWTSPKPDKAL"
     exon            394..655
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /inference="alignment:Splign:2.1.0"
     exon            656..819
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /inference="alignment:Splign:2.1.0"
     exon            820..1265
                     /gene="Rdh16f2"
                     /gene_synonym="CRAD-L"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagtctgca agagcagatg ccaggctcat tttgactctc tctctctctc tctctctctc
       61 tctctcctct tctacaaacc atgtggctct acatggtggc gctactgggc ctgtggatgc
      121 tcctgcgctt ttttagagag aggcaagtgg tggaccatct tcaagacaag tatgtcttca
      181 tcacaggctg tggctctggc tttgggaacc tgctggccag acagctggac aggagaggca
      241 tgagagtgtt ggctgcatgt cggaaggagg agggagccga ggagctgagg agaaagacat
      301 cagaaaggct ggagacagtg atcctggatg tcaccaagac agagaatatt gtggcagcca
      361 ctcagtgggt gaaggagcgt gttgggaaca gaggactctg gggcctggtc aacaacgctg
      421 gcatctccgt cccctcgggt cccaacgagt ggatgaaaaa acaggacttt gcaagtgtac
      481 tggatgtgaa cctgttgggc ttgatcgagg tgactctgag catgctgccc ttagtgagga
      541 aggcgagggg ccgtgtggtc aacgtctcca gcatcttggg cagagtgtca cttggtggta
      601 gtggtggtta ctgcatctcc aagtatggta tagaggcctt ctcagactcc cttaggaggg
      661 agctccgcta ctttggggtg aaggtggcta ttatagagcc tggcttcttc ctgactggta
      721 tggccagtag tgccagatta tgctcaaata tccagatgct gtgggaccag accagctcag
      781 aaatcaggga gatctatgga gagaaatacc tggcatccta tctgaaaaac ctaaacgaat
      841 tggaccagag gtgcaacaag gacctgtctg tggtgactga ctgcatggag cacgctctga
      901 ctgcctgtca ccctcgcacg agatactcag ctggctggga tgctaagctc ttcttcaccc
      961 ccttgagcta cctgcccacc tttcttgtgg atgctcttct atactggact tctccaaaac
     1021 ctgacaaagc cctgtgaaag ctagatcctt ttgtgttgtt gggtcaatgg aagtgctgtg
     1081 tgagggtgca gagcctcagg aggaggaaga ttcctgttct cagcccacat gtgctgtgca
     1141 taggtgcctg gctttttctt cctctgtata acatggggga catgggacca caggaatctg
     1201 ctatgcttaa atgatcatta ccattgttgg tgaaagaaaa aaaacgacct cccctgtctc
     1261 gggttaaaaa aaaaaaaaaa a
//
