LOCUS       NM_021525               1803 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA terminal phosphate cyclase-like 1 (Rcl1), mRNA.
ACCESSION   NM_021525
VERSION     NM_021525.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Kurogi,S., Sekimoto,T., Funamoto,T., Ota,T., Nakamura,S., Nagai,T.,
            Nakahara,M., Yoshinobu,K., Araki,K., Araki,M. and Chosa,E.
  TITLE     Development of an efficient screening system to identify novel bone
            metabolism-related genes using the exchangeable gene trap
            mutagenesis mouse models
  JOURNAL   Sci Rep 7, 40692 (2017)
   PUBMED   28106071
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1803)
  AUTHORS   Wang,M., Anikin,L. and Pestov,D.G.
  TITLE     Two orthogonal cleavages separate subunit RNAs in mouse ribosome
            biogenesis
  JOURNAL   Nucleic Acids Res 42 (17), 11180-11191 (2014)
   PUBMED   25190460
REFERENCE   4  (bases 1 to 1803)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   5  (bases 1 to 1803)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   6  (bases 1 to 1803)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 1803)
  AUTHORS   Billy,E., Wegierski,T., Nasr,F. and Filipowicz,W.
  TITLE     Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase,
            associates with U3 snoRNP and is required for 18S rRNA biogenesis
  JOURNAL   EMBO J 19 (9), 2115-2126 (2000)
   PUBMED   10790377
REFERENCE   8  (bases 1 to 1803)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK009709.1.
            
            On Jun 11, 2003 this sequence version replaced NM_021525.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009709.1, AK168153.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 23.61 cM"
     gene            1..1803
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /note="RNA terminal phosphate cyclase-like 1"
                     /db_xref="GeneID:59028"
                     /db_xref="MGI:MGI:1913275"
     exon            1..266
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..1252
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /note="RNA cyclase homolog"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase-like protein"
                     /protein_id="NP_067500.1"
                     /db_xref="CCDS:CCDS29731.1"
                     /db_xref="GeneID:59028"
                     /db_xref="MGI:MGI:1913275"
                     /translation="MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGL
                     RDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLEAL
                     LCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKILRRGMP
                     PGGGGEVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNK
                     FIPDIYIYTDHMKGVSSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAVLPEDLG
                     RNCAKLLLEEIYRGGCVDSTNQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSF
                     FQVMFKVETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK"
     exon            267..338
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            339..514
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            515..589
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            590..714
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            715..840
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            841..997
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1101
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1803
                     /gene="Rcl1"
                     /gene_synonym="2310040A02Rik; Rnac; RPCL1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctcccctc tgacccggtg tctagtcgct ctgtcttcct gttctaaacc acgtggacgc
       61 gtcgggggct gccttggtcc tggtcgcgct cccgggtccc gggtcccggg cctctgcgga
      121 cggcgcgcac atggcgaccc aggcgcactc actcagctac gcggggtgta acttcttgcg
      181 ccagcggctg gtcctgtcca ccctgagcgg gcgaccggtc aagatccgca ggattcgcgc
      241 cagggacgac aacccgggcc tccgagattt tgaagcaagc tttataaggc tattggataa
      301 aataaccaat ggttctcgaa ttgaaatcaa ccaaacagga acaaccttat actaccagcc
      361 tggcctcctg tatggcgggt ctgtggagca cgactgcagt gtcctccgtg gcattggcta
      421 ttacctggaa gctctgcttt gcctggctcc gtttatgaaa cacccattaa aaatcgttct
      481 gcgaggagtg accaatgacc aggttgaccc ttcggttgat gttcttaaag cgacagcgct
      541 ccctctactg aaacagtttg ggatcgatgg agaatcattt gagctaaaga tcttgcgtcg
      601 gggaatgccc cctggaggag ggggcgaagt gcttttctcc tgccccgtga ggaaggtcct
      661 gaagcctgtc cagctcacag acccaggaaa aatcaagcgg atcagaggaa tggcgtactc
      721 agttcgtgta tcacctcaga tggcaaaccg gatcgtggat tccgcaagga gcatcctcaa
      781 caagttcata cctgacatct acatctacac ggatcacatg aaaggcgtca gttctgggaa
      841 gtctccaggc tttgggctgt cgctggttgc agagactacc aacggtacct tcctgagtgc
      901 ggaactggcc tccaatcccc agggccaggg agcagcagtg cttcccgagg acctcggcag
      961 gaactgtgca aagctgctac ttgaagagat ctacaggggt ggatgcgtag actcgaccaa
     1021 ccaaagtcta gttctgctgc tcatgaccct tggacagcag gacgtttcca aagtcctgct
     1081 gggaccactc tcaccctaca cgatagaatt tttgcggcat ctgaagagct ttttccaggt
     1141 tatgtttaaa gttgaaacca agccatgtgg tgaagaactg aagggcgggg acaaagtgct
     1201 aatgacctgc gttggtattg gcttctctaa cctgagcaag accctcaagt gatcctgtac
     1261 aacgtcaggc tctgctgtgc atggatgaag cagaaagatg cgaaggacca cagggaccaa
     1321 gtccaggcat gtccatccag gacaggcggc ctcttaacat tacagacttt cttttccact
     1381 gaaaatactg atttgcaaat acaagctgtc tctcccacgt gacttccagc tgcttctcca
     1441 atgacattcc tcggaggccc aggctgtggg cttccagact cacctggagg aggggccctc
     1501 cgtgagtggc cacgctgcta gacagtatcc cagcagctct tcttcatctt tggattgtgg
     1561 ctctgtgtag ggtttatgtg acaacgtgac agtgtgtgta gaagacctcc agtctgttgt
     1621 gccagaagtt ggggcactgg ttccctctct cgtcttagga ataatttgct tgcatgggca
     1681 catgctatac ctcacatggt aacttgtgtt tgtgtgggcc tggtggttgg gatggggagg
     1741 gcagacatgt cttaaatgtt ttctgtatcc caggtatggc ataaaatttt gtttttattc
     1801 ttc
//
