LOCUS       NM_173445               2340 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus RCC1 domain containing 1 (Rccd1), mRNA.
ACCESSION   NM_173445 XM_911647
VERSION     NM_173445.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Liu,X., Jiao,Y., Cao,Y., Deng,N., Ma,Y., Hasty,K.A., Kang,A.,
            Chen,H., Stuart,J.M. and Gu,W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2340)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 2340)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK088482.1, AC136740.10, AK030872.1 and BM218704.2.
            
            On Feb 27, 2010 this sequence version replaced NM_173445.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030872.1, SRR13422601.1001144.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-772               AK088482.1         2-773
            773-1092            AC136740.10        95893-96212         c
            1093-1707           AK030872.1         1064-1678
            1708-1875           AC136740.10        93890-94057         c
            1876-2320           AK030872.1         1847-2291
            2321-2340           BM218704.2         1-20                c
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="NOD"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 45.64 cM"
     gene            1..2340
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /note="RCC1 domain containing 1"
                     /db_xref="GeneID:269955"
                     /db_xref="MGI:MGI:2444156"
     exon            1..705
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            706..772
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            773..1092
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             924..2057
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /codon_start=1
                     /product="RCC1 domain-containing protein 1"
                     /protein_id="NP_775621.2"
                     /db_xref="CCDS:CCDS21394.1"
                     /db_xref="GeneID:269955"
                     /db_xref="MGI:MGI:2444156"
                     /translation="MAEKRHGAWFGFGFCGFGQALGSGNSHHSVYSPEPLHASDDICQ
                     VSAGWSYTALVTRGGRVELSGSVSGAADGCRDVWASEELLVLLRNKGGSSTEVQAWVP
                     GSALQGEPLWVQNLVSGAKGQGEDEPSRESRMGTLPLLPCARAYVTPEPPFCQPLAPE
                     LRVRQLELGAEHVLLLCAAGQVFSWGAGRHGQLGHGTLEAELEPRLLEALQGLRMAKV
                     AAGGWHSVCLSETGDIYIWGWNESGQLALPTRSGTENKAEREEATELNEDGLKEELAV
                     ADAGAPAHFIAIQPFPALLDLPLGSDAVMASCGSRHTAVVTRTGELYTWGWGKYGQLG
                     HKDSTSLDRPCCVEYFVERQLEVRAVTCGPWNTYVYAMERDKS"
     exon            1093..1489
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1611
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1707
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..1875
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..1905
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1906..2340
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2193..2198
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2218
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /note="major polyA site"
     regulatory      2302..2307
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2321
                     /gene="Rccd1"
                     /gene_synonym="5830436H09; E430018M08Rik"
ORIGIN      
        1 cctgtttggc cctcagtcct gcgcttgttc agtagtgaac gacctccttc cttgttcaaa
       61 gggaatggag ggtgtcaggg cttggtcttc gcccgccgtt tccctcggat cgtcaagagt
      121 atccattcat tcagtggttc caaccgcgtc cactgctgtt ggcgcgcaca ggagacttca
      181 gcctactgcc tggtggcagg taacccggcg catgtgtgcc ggtcaggcgc gccccagtgg
      241 tgacgtcacc gctcgtgcct gcgattggct ccgaaaagct ggcgcaccga atgaccgcgt
      301 tgcttggcgc ggaggccctt aaaaagtgct ttactccgcc ggccatctgt tccccgagcc
      361 atacattact atgcgctgct cactttcaag gtttcctgct taaagggctt tcctgatgag
      421 ttgagggtac aggctaatgg gaagatgaaa gattcctttg gttggggatc caggagctgt
      481 agtctcagat ctgacttaag aggctcgaga gtgtctgtaa aattctgatc cattcgagtg
      541 aagtggcgtt gcattttgaa ccgcgcgact gtctcccaat ttcagcctga gctccctggg
      601 acccatagtc atcacattaa gtcaaaggaa aggcgcagca aagacttctt gaataaacga
      661 ccgagtaagg tccagtggaa attgtccaaa tgcctctgaa acccgctgta cgctggattt
      721 gagccaaaag tagaagtggt cagctgcaga cagttcagca gtcaaaaatc tggtagtgca
      781 acttcagccc cctggaaggc aggatttgcc agcgttccta aggtgtcctg tttgcaagag
      841 tctccttggt ttgcaacctt aatcttgcat cccttaatcc acaccacagc caagtgtcca
      901 cccacagagg gctcaacctg gacatggccg agaaacggca cggagcctgg ttcggctttg
      961 gtttctgtgg cttcgggcaa gcgctgggtt ctgggaacag ccaccattca gtgtacagtc
     1021 ctgaaccact gcatgccagt gatgatattt gccaagtgag cgcaggctgg agctacactg
     1081 ccctggtgac ccgtggaggc cgggtggaat tgtcaggttc tgtgagcggt gcagcagacg
     1141 gctgcaggga cgtgtgggct tcggaggaac tcctggtgct gctacgcaac aagggcggct
     1201 ccagcacgga agtgcaggcc tgggtaccag gttctgcgtt acagggggag cccctctggg
     1261 tccagaactt ggtttctggg gcaaagggcc aaggggaaga tgaacccagc agggagtcta
     1321 ggatggggac cctgccgttg ctaccctgcg cccgtgccta tgtgacccca gaaccaccct
     1381 tctgccagcc tctggcccca gagctgcggg tccgccagct ggagctggga gctgagcatg
     1441 tgctgctgtt gtgcgcagct ggccaggtgt tctcctgggg tgcgggcagg catggacagc
     1501 tgggccacgg gactctggag gcagaactag agccaagact gttggaggca ctgcagggcc
     1561 tgcggatggc taaggtggct gcaggtggct ggcactctgt gtgtttgagt gaaacggggg
     1621 atatttatat ctggggctgg aatgagtcag ggcagctggc cctgcccaca aggagtggga
     1681 cagagaacaa agcagagaga gaggaagcca cagaattgaa tgaagatggt ctcaaagagg
     1741 aattagctgt ggctgatgca ggagctcctg cccacttcat agccatccag cccttccctg
     1801 ctcttctgga tcttcccctg ggctcagatg cagttatggc cagctgcgga tcccgacaca
     1861 cagctgtggt gacacgcaca ggagaactct atacctgggg ctggggtaaa tacggacagc
     1921 ttggccacaa ggacagcacc agcttggatc gaccctgctg tgtggagtac tttgtagaaa
     1981 gacaacttga agtaagggct gtgacatgtg gaccctggaa tacctatgtc tatgcaatgg
     2041 aaagagacaa aagctgaact atcccttagt ggatccccac ttatgtgcct gggtgagaaa
     2101 gaactctgct tcaacatgct gtcctaggtg catggaaacc taagttttga aacaaggttc
     2161 acagcgatct cctctgcctt ctaagtgctg ggattaaagg tgcatgattt cagaataaga
     2221 caaagcttac aaggcatgta tgaaagaatt gaagatatat atatcttcaa tttatattta
     2281 tatatatata tataaataat aaataaataa taaataataa ataaataata ataaataaat
//
