LOCUS       NM_033572               2310 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus reculator of chromosome condensation 1 like (Rcc1l),
            mRNA.
ACCESSION   NM_033572
VERSION     NM_033572.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Huang,G., Massoudi,D., Muir,A.M., Joshi,D.C., Zhang,C.L., Chiu,S.Y.
            and Greenspan,D.S.
  TITLE     WBSCR16 Is a Guanine Nucleotide Exchange Factor Important for
            Mitochondrial Fusion
  JOURNAL   Cell Rep 20 (4), 923-934 (2017)
   PUBMED   28746876
REFERENCE   3  (bases 1 to 2310)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   4  (bases 1 to 2310)
  AUTHORS   Merla,G., Ucla,C., Guipponi,M. and Reymond,A.
  TITLE     Identification of additional transcripts in the Williams-Beuren
            syndrome critical region
  JOURNAL   Hum Genet 110 (5), 429-438 (2002)
   PUBMED   12073013
REFERENCE   5  (bases 1 to 2310)
  AUTHORS   DeSilva,U., Elnitski,L., Idol,J.R., Doyle,J.L., Gan,W.,
            Thomas,J.W., Schwartz,S., Dietrich,N.L., Beckstrom-Sternberg,S.M.,
            McDowell,J.C., Blakesley,R.W., Bouffard,G.G., Thomas,P.J.,
            Touchman,J.W., Miller,W. and Green,E.D.
  TITLE     Generation and comparative analysis of approximately 3.3 Mb of
            mouse genomic sequence orthologous to the region of human
            chromosome 7q11.23 implicated in Williams syndrome
  JOURNAL   Genome Res 12 (1), 3-15 (2002)
   PUBMED   11779826
REFERENCE   6  (bases 1 to 2310)
  AUTHORS   Valero,M.C., de Luis,O., Cruces,J. and Perez Jurado,L.A.
  TITLE     Fine-scale comparative mapping of the human 7q11.23 region and the
            orthologous region on mouse chromosome 5G: the low-copy repeats
            that flank the Williams-Beuren syndrome deletion arose at
            breakpoint sites of an evolutionary inversion(s)
  JOURNAL   Genomics 69 (1), 1-13 (2000)
   PUBMED   11013070
REFERENCE   7  (bases 1 to 2310)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY725117.1, AK017733.1 and BC055335.1.
            
            On May 7, 2009 this sequence version replaced NM_033572.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017733.1, BC055335.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-486               BY725117.1         9-494
            487-2292            AK017733.1         486-2291
            2293-2310           BC055335.1         2291-2308
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 74.42 cM"
     gene            1..2310
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /note="reculator of chromosome condensation 1 like"
                     /db_xref="GeneID:94254"
                     /db_xref="MGI:MGI:2137600"
     exon            1..368
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..1439
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /note="williams-Beuren syndrome chromosomal region 16
                     protein homolog; Williams-Beuren syndrome chromosome
                     region 16 homolog; RCC1 like; RCC1-like protein"
                     /codon_start=1
                     /product="RCC1-like G exchanging factor-like protein"
                     /protein_id="NP_291050.1"
                     /db_xref="CCDS:CCDS19718.1"
                     /db_xref="GeneID:94254"
                     /db_xref="MGI:MGI:2137600"
                     /translation="MLAAARALRGPRPRWPTPAREHWTPAGRSRSRREAAEAEADVPV
                     FQYVGERAARADRVFVWGFSFSGALGVPSFVVPSSGPGPRAGLRPRRRIQPVPYRLEL
                     DHKISSAACGYGFTLLSSKTKDVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSP
                     VPLPLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNSHGQCGRKVVEDEVYSESHK
                     VHRMQDFDGQVVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSTPSKLGGD
                     LAGVTVVQVATYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGK
                     VKQVACGGTGCAVLNAEGHVFVWGYGILGKGPKLLETAIPEMIPPTLFGLTEFNPEVQ
                     VSQIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGV
                     DHMVTLAKSFI"
     exon            369..498
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            499..627
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            628..694
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            695..746
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            747..831
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            832..1013
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1101
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1275
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1361
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..2310
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2268..2273
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /note="hexamer: AATAAA"
     polyA_site      2298
                     /gene="Rcc1l"
                     /gene_synonym="5730496C04Rik; Wbscr16"
                     /note="major polyA site"
ORIGIN      
        1 aagggtgaca caagatggcg gcgcccataa gcggttgagg cgtgacgcgg aggatgttgg
       61 cggcggcccg ggctctgcgg gggccgcggc cgaggtggcc gacaccggct cgcgagcact
      121 ggacaccggc cggccgttcg cggagccggc gagaagcggc cgaggccgag gcggacgttc
      181 cggtgtttca gtacgtgggc gagcgcgcgg ctcgcgccga tcgcgtcttc gtctggggct
      241 tcagcttctc cggggcgctc ggggtgccca gcttcgtggt gccgtcctcg gggcctggac
      301 cgcgcgccgg cctgcggccc cgacgcagga tccagccggt cccctaccgc ctggagctgg
      361 atcataagat ttcctctgct gcctgtggct atggattcac attgctgtcc tcgaaaacca
      421 aggatgttac aaaagtctgg ggcatgggac tcaacaaaga ttcccagctg ggattccaca
      481 ggagccggaa ggataaaacc aggggctatg agtacgtttt ggagccctcg cctgtcccgc
      541 tgccgctgga cagacctcag gagacaaagg tgttgcaggt gtcctgcggt cgagcacact
      601 cccttgtcct gacagacaga gaaggtgtct tcagcatggg caacaattcc cacgggcagt
      661 gtggccggaa ggtggtggag gatgaagtat acagcgagag tcacaaagtg cacaggatgc
      721 aggacttcga tggacaggtg gtccaggttg tctgtggtca ggaccacagc ctgttcctca
      781 cagacaaagg tgaagtctat tcttgtggct ggggtgccga tggacagaca ggcctgggtc
      841 actacaacat caccagcaca cccagcaagc tgggcggaga ccttgccggg gtgaccgttg
      901 tccaggtcgc cacctacggt gactgctgct tagctttgtc cgctgatgga ggtgtctttg
      961 gctggggaaa ttccgagtac ctgcagttgg cctctgtcac agactccaca caggtgaatg
     1021 tccctcggtg cctgcctttc tctggagtag gcaaggtgaa gcaggtggct tgtggtggca
     1081 caggctgtgc tgtactgaac gcggagggac atgttttcgt ctggggctat ggaattcttg
     1141 ggaaaggacc aaagctcttg gaaacggcaa ttccagaaat gattccaccc acgctctttg
     1201 gtttgacgga gtttaaccct gaagtccagg tttcccagat ccgatgtggg cttagccact
     1261 ttgccgcact caccaacaag ggtgagctgt tcgtgtgggg caagaacatc cgagggtgct
     1321 tggggattgg ccgcctggaa gaccagtact tcccatggag ggtgacgatg cccggtgagc
     1381 ctgtggatgt ggcgtgtgga gtggatcaca tggtgactct agccaagtca ttcatctgaa
     1441 aggccctctg ggcccagcct gggagccaca ccacagcagc agcttggcag aggcaggggg
     1501 tggccaccag cagagcttct gagggtactg ggagagggcc agggcctctg gggtgcagga
     1561 tgcttgctgt gtgtcctcag tggggacatt ctactagagg tgtgtggaca aagcccttcc
     1621 cccgctgagg ttcctgctgc tggcctcagc tcaggatggc tacagttggc ttgccgtgtt
     1681 tctgaggagc accagggcgt gaagaccttg ggtggccagg cagattcctt ttccaggtaa
     1741 cacatggtag catctgggga tgtgtcttgt ctgagacact attcttagag aaagttcact
     1801 gctcatgaca catttgatat taagagttta gagacatgac aaggcactca gaagaacttg
     1861 tagtcccctg tcacaggagg ataaagttgg cctcagctca gcaagaagcc agctgactgc
     1921 ctgcagctag ggcctctggt cagctgtcat cccaggagtc ccgcagaagg acagtccagg
     1981 agcccaggat gccttggctt gagactcttg atggagctgc cagtgggagc cagcctcccg
     2041 ctcaggccta cagtatccca gccttggaac ttcctcactg cctggctttg aacagcccag
     2101 aagcccctga agaaagactc tgcgggccaa gtgcttgtgg gctgagggcc gtggaatctt
     2161 ggctgaaggg ctggccttgg agtaggaggc ctcagaaact gggaaatact tgtttttagg
     2221 gaagcttgcc ctttcctttc agaacagggt tggaaaaggt cttttggaat aaagcctatt
     2281 ttctgccttt ttacagaatg gaggtcttgt
//
