LOCUS       NM_027764               3949 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus regulator of chromosome condensation (RCC1) and BTB
            (POZ) domain containing protein 1 (Rcbtb1), transcript variant 1,
            mRNA.
ACCESSION   NM_027764 XM_127781
VERSION     NM_027764.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3949)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3949)
  AUTHORS   Plafker,K.S., Singer,J.D. and Plafker,S.M.
  TITLE     The ubiquitin conjugating enzyme, UbcM2, engages in novel
            interactions with components of cullin-3 based E3 ligases
  JOURNAL   Biochemistry 48 (15), 3527-3537 (2009)
   PUBMED   19256485
REFERENCE   3  (bases 1 to 3949)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   4  (bases 1 to 3949)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 3949)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ183647.1, AK033501.1 and BC040764.1.
            
            On Mar 13, 2008 this sequence version replaced NM_027764.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK088299.1, AK033501.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                CJ183647.1         2-68
            68-2669             AK033501.1         2-2603
            2670-3949           BC040764.1         1365-2644
FEATURES             Location/Qualifiers
     source          1..3949
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 31.47 cM"
     gene            1..3949
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /note="regulator of chromosome condensation (RCC1) and BTB
                     (POZ) domain containing protein 1"
                     /db_xref="GeneID:71330"
                     /db_xref="MGI:MGI:1918580"
     exon            1..357
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            358..527
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     CDS             402..1997
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /note="isoform 1 is encoded by transcript variant 1; RCC1
                     and BTB domain-containing protein 1; regulator of
                     chromosome condensation and BTB domain-containing protein
                     1"
                     /codon_start=1
                     /product="RCC1 and BTB domain-containing protein 1 isoform
                     1"
                     /protein_id="NP_082040.2"
                     /db_xref="CCDS:CCDS27168.1"
                     /db_xref="GeneID:71330"
                     /db_xref="MGI:MGI:1918580"
                     /translation="MVDVGKWPIFTLLSPQEAGSIRKACVFGTSANEAIYVTDNDEVF
                     VFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHN
                     GYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQV
                     GSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNN
                     GNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSP
                     TQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFCCTDDVFA
                     CFGTPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYIHVHKAVLKIRC
                     EHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLATSY
                     CENRLKRLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAF
                     WQMDGPLLKEFIAKASKCGAFKN"
     exon            528..678
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            679..845
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            846..1004
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1112
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1255
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1446
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1573
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1574..1725
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1726..1856
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1857..3903
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3883..3888
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /note="hexamer: AATAAA"
     polyA_site      3903
                     /gene="Rcbtb1"
                     /gene_synonym="5430409I18Rik; CLLD7; CLLL7"
                     /note="major polyA site"
ORIGIN      
        1 tttggggggg aggagccggc tacggctaag gcggcggcgg cgcagcggag tcagggcctg
       61 gccgggcggc ctgacaggta gagcgctgca gggcggcggt gcgggcgagc gagcaggcga
      121 gccggacagg gccttgttcg gccgctggct gctgagtccg cgccctcccg agggccgtgc
      181 gcaccaggcg cgttcgcgac tccccggcga cgcgcacccc gcaccgggca cccgcggatt
      241 ccgtcttgcg ggcgcttccc ccaggtgtgc ggcgagccga gtacgtggcg ttgcccgcgg
      301 cctgcctctg aggagctgcg ctgtccgccc tgcgggggag gaacccggag cacgcagcag
      361 agatgtcagc ttatttatag gaattgtcca aagccacagt catggtggat gtaggaaagt
      421 ggccaatctt cactctgctc tcaccccagg aagctggatc tatcaggaaa gcatgtgtct
      481 ttggtacctc tgccaatgag gcgatctatg tcactgacaa tgatgaggtc ttcgtgtttg
      541 gactgaacta cagtaactgt ctaggaactg gagataacca gagcactctg gtgcccaaga
      601 aactagaagc tttgtgtgga aaaaagatca aaagtcttag ttacgggagt ggcccccatg
      661 tcctcctcac cactgaagat ggagtcgtct atgcctgggg ccataatgga tacagccaac
      721 tgggaaatgg gaccaccaac caaggcattg ctcctgtcca agtctgtact aatctcttga
      781 tcaagcaggt gattgaagta gcttgtggtt cacatcattc gatggcttta gcagctgatg
      841 gagagttatt tgcttggggc tataacaact gtggtcaggt gggatcagga tctacagcca
      901 atcagccaac tcctcggaaa gttacaaact gtttacatac caagagagtg gtcaacattg
      961 cctgtggtca gacctcatcc atggctgttc tggacagtgg tgaggtgtat ggctggggct
     1021 acaatggcaa tggacagctg ggcttgggaa acaatggcaa ccagttgacc ccagtgagag
     1081 tggcggctct gcacggcatg tgtgtgaacc agattgtctg tggttatgca catacactag
     1141 cactcacaga tgagggcttg ctctatgcct ggggagctaa cacatatggg cagctgggaa
     1201 ctggaagtaa aaataacctg ctgagcccaa cacaaatcat ggtggaaaaa gaaagggtta
     1261 tagagattgc agcttgccac tccacccaca catctgctgc caagacacaa ggcgggcacg
     1321 tgtacatgtg gggccagtgc cggggccagt cggtgatcct tccgcacctc acccacttct
     1381 gctgcaccga tgacgtgttt gcctgctttg gcaccccggc tgtctcatgg cgcctcctgt
     1441 ctgtagagca tgaagacttt ttaacagttg cagagtcact gaagaaagaa tttgatagtc
     1501 cagaaactgc tgatctaaag tttcgaattg atggaaaata tattcatgtc cataaagctg
     1561 ttctgaaaat caggtgtgag cactttcggt ccatgtttca gtcttattgg aatgaggata
     1621 tgaaggaagt gatagagata gaccagtttt cttaccctgt gtaccgtgcc tttctccagt
     1681 acctctacac agacacagtg gacctgcctc ctgaggatgc tataggcctt ttggacttgg
     1741 caacgtcgta ctgtgagaac agactgaaga ggctttgtca gcacatcatc aagcgaggaa
     1801 ttactgtgga gaacgccttt tcattgttct ctgctgcagt cagatatgac gcagaggatt
     1861 tagaagaatt ctgctttaag ttttgcatca atcatttgac agaagttacc cagacggctg
     1921 cgttctggca aatggatggt cccctgctaa aggagttcat tgctaaagcc agtaaatgtg
     1981 gagcctttaa gaactgaagc caaggctgct gggctaggtg tgagagctct ggggcactgt
     2041 gggtgcggtg atctgcaggt aaagccccac accatagaca gtgctctgta ggaatatatg
     2101 aaggatattt gcttcttgtg agtccatttc ttacaactct gtgtctagat atgtatgttt
     2161 tacatgtatg ttttacatgt gtttttctta catttgactg agctttggga aaggatgaaa
     2221 gtttacatgc ttttgttctt ttaattttga tgagaggatg ttttgagctt gtattaagaa
     2281 agccaggaaa atatccctag acctttggcc acaagccttt ccacatggtc tgtggcagac
     2341 aggccctgcc cagtgctccc tgagtgctgc tcactgtcac caacctcctg tgggggcatc
     2401 agcactgtgg gggtctctta agaaatagtc ttaatatgca ttaaacccac ttaagcagtc
     2461 aagaaatact aggtttgctg agatgctctt aagggacagg cacctagggc tggaaagatg
     2521 gctcagcagg taaaggctct tattactaag cctgatgact taacttgaat ccccagaatc
     2581 cacatggtgg agagagctga cttataagtt gtcccttact gctacacatg taccatgtct
     2641 gcacaaagac acaataaagg agaaagaaga agaactaaaa gatttaggtc cctatagaga
     2701 agtgacaaga agtacctatg agaagctgat ggtaaaagag ctttgcttgg agaggagagt
     2761 gttacaaaaa ttagggttcc ccgcacccca attatccaac agtgcttcac taaggttgtg
     2821 tttgagacca gcgtgcacac taccatcccc ctctccctat aattactcac aaacacattc
     2881 tacatggctg ctcttttctg acttgatgtg attgttaaag ccacccttct tacaggactc
     2941 catagaatgc tcactgtttt cggtggtggg aggagtccag gccaaaatcc atcaaaactt
     3001 aattgaaact tcaccttaac ctctccagtt ttggttgatt ttttttttct ttctataatt
     3061 gtgttaggaa tacatttgtc atacgttcag ctagggctcc ctattcatgc ctttcccgaa
     3121 aaggtcattt gtaaaatact aggccagggt ggatggtgac tgaggcacca aagacaggca
     3181 ggcatgtgtg ttgacaaaca agataaatag gaacaagagc tcaaagcccc tcttcctgat
     3241 catgttacag ctgttgcctg gtgcatgggt aagtgacaac tgcctcctag gtggcagttt
     3301 tcctggccaa gatgatgagt gcacattaat ctgaactgct gtagtgaatg gaccttctgt
     3361 agaacctcag tcctgtagac ttagggcctc aaagcagaaa ctttagaaca tttactggtg
     3421 gtcttacttg aaaaacttac ccacgaaaaa gcacaaatta cacctgcaaa tccacacccg
     3481 tagacagttc acctgacaaa aacgtgctga gttcctgatc cagctgaaga cacactttta
     3541 gcttgctgaa cagctagggt gtttttgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3601 gtgtgtgtgt gtgtgtgtgt gtgttagtga aagaaaagtc ctttaaaaag ggtttgcaaa
     3661 ttttttttaa atgcaatctt tttatttttc tacttggttt tggttataat catagaaagc
     3721 aagaaactat tattgaaatt aatgttttct tctgatataa taatggaagc cagagaagtc
     3781 acatttctta aaagatccca aactgtatcc ttgaagttac tggaaccagt tttatacttc
     3841 agtaattagg atgcatttat gtaatttctt gattgacatg ctaataaaca acctctgaag
     3901 gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
