LOCUS       NM_009036               2456 bp    mRNA    linear   ROD 17-DEC-2024
DEFINITION  Mus musculus recombination signal binding protein for
            immunoglobulin kappa J region-like (Rbpjl), mRNA.
ACCESSION   NM_009036
VERSION     NM_009036.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Cobo,I., Paliwal,S., Bodas,C., Felipe,I., Melia-Aloma,J.,
            Torres,A., Martinez-Villarreal,J., Malumbres,M., Garcia,F.,
            Millan,I., Del Pozo,N., Park,J.C., MacDonald,R.J., Munoz,J.,
            Mendez,R. and Real,F.X.
  TITLE     NFIC regulates ribosomal biology and ER stress in pancreatic acinar
            cells and restrains PDAC initiation
  JOURNAL   Nat Commun 14 (1), 3761 (2023)
   PUBMED   37353485
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2456)
  AUTHORS   Martinez-Ramirez,A.S., Borders,T.L., Paul,L., Schipma,M., Wang,X.,
            Korobova,F., Wright,C.V. and Sosa-Pineda,B.
  TITLE     Specific Temporal Requirement of Prox1 Activity During Pancreatic
            Acinar Cell Development
  JOURNAL   Gastro Hep Adv 1 (5), 807-823 (2022)
   PUBMED   37829188
REFERENCE   4  (bases 1 to 2456)
  AUTHORS   Heymans,C., Delcorte,O., Spourquet,C., Villacorte-Tabelin,M.,
            Dupasquier,S., Achouri,Y., Mahibullah,S., Lemoine,P., Balda,M.S.,
            Matter,K. and Pierreux,C.E.
  TITLE     Spatio-temporal expression pattern and role of the tight junction
            protein MarvelD3 in pancreas development and function
  JOURNAL   Sci Rep 11 (1), 14519 (2021)
   PUBMED   34267243
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2456)
  AUTHORS   Campbell,S.A., McDonald,C.L., Krentz,N.A.J., Lynn,F.C. and
            Hoffman,B.G.
  TITLE     TrxG Complex Catalytic and Non-catalytic Activity Play Distinct
            Roles in Pancreas Progenitor Specification and Differentiation
  JOURNAL   Cell Rep 28 (7), 1830-1844 (2019)
   PUBMED   31412250
REFERENCE   6  (bases 1 to 2456)
  AUTHORS   Zhang,Y., Rath,N., Hannenhalli,S., Wang,Z., Cappola,T., Kimura,S.,
            Atochina-Vasserman,E., Lu,M.M., Beers,M.F. and Morrisey,E.E.
  TITLE     GATA and Nkx factors synergistically regulate tissue-specific gene
            expression and development in vivo
  JOURNAL   Development 134 (1), 189-198 (2007)
   PUBMED   17164424
REFERENCE   7  (bases 1 to 2456)
  AUTHORS   Beres,T.M., Masui,T., Swift,G.H., Shi,L., Henke,R.M. and
            MacDonald,R.J.
  TITLE     PTF1 is an organ-specific and Notch-independent basic
            helix-loop-helix complex containing the mammalian Suppressor of
            Hairless (RBP-J) or its paralogue, RBP-L
  JOURNAL   Mol Cell Biol 26 (1), 117-130 (2006)
   PUBMED   16354684
  REMARK    GeneRIF: RBPJL is the third subunit of an unusual bHLH factor
            complex that binds and activates pancreatic acinar specific genes
REFERENCE   8  (bases 1 to 2456)
  AUTHORS   Wagener,R., Kobbe,B., Aszodi,A., Aeschlimann,D. and Paulsson,M.
  TITLE     Characterization of the mouse matrilin-4 gene: a 5' antiparallel
            overlap with the gene encoding the transcription factor RBP-l
  JOURNAL   Genomics 76 (1-3), 89-98 (2001)
   PUBMED   11549321
REFERENCE   9  (bases 1 to 2456)
  AUTHORS   Minoguchi,S., Ikeda,T., Itohara,S., Kaneko,T., Okaichi,H. and
            Honjo,T.
  TITLE     Studies on the cell-type specific expression of RBP-L, a RBP-J
            family member, by replacement insertion of beta-galactosidase
  JOURNAL   J Biochem 126 (4), 738-747 (1999)
   PUBMED   10502683
REFERENCE   10 (bases 1 to 2456)
  AUTHORS   Minoguchi,S., Taniguchi,Y., Kato,H., Okazaki,T., Strobl,L.J.,
            Zimber-Strobl,U., Bornkamm,G.W. and Honjo,T.
  TITLE     RBP-L, a transcription factor related to RBP-Jkappa
  JOURNAL   Mol Cell Biol 17 (5), 2679-2687 (1997)
   PUBMED   9111338
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from Y10926.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: Y10926.1, BC152311.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 85.16 cM"
     gene            1..2456
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /note="recombination signal binding protein for
                     immunoglobulin kappa J region-like"
                     /db_xref="GeneID:19668"
                     /db_xref="MGI:MGI:1196616"
     exon            1..125
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            126..228
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            229..354
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            355..425
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            426..541
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            542..716
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            717..854
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            855..964
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1117
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1273
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1377
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..2456
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1799
                     /gene="Rbpjl"
                     /gene_synonym="RBP-L; Rbpsuhl"
                     /note="major polyA site"
ORIGIN      
        1 gaggatcgga tcggggctta gatgtgtgaa cggtatcgaa gtcagtggcg gtagatgtgc
       61 ccagagggca gcaagagagc ggcctgggcc tcgatgagca gccatggacc ccagggagac
      121 aacagacccc tcgttgcccc cgggcccttt gactcacctg agcctgccgg acagctcaga
      181 ggtgcggcta cagagcgacg ggcccagcct cctggggagt tggaccaggt cacccccaga
      241 gcatgccatc atcctaagag aaggtgtgcg cacatgcctg cagcaaagat gtgagcagac
      301 tgtgtggatc ctgcatgcca aggtggctca gaaatcctat ggaaatgaga agcggttctt
      361 ctgtcctcca ccctgtgtct acctcgcggg tcctggctgg agggtgaagc caatgcaaga
      421 ccaagccctc caatctgcgg agaccgggcc caccgtctgc ggttacatgg gactggacgg
      481 tgcgtccggc agcgctcccg agacccagaa gttgaacttt gaagagcagc cggactccag
      541 ggaatttggt tgtgccaaga ccctgtacat ctcggacgcc gataagagga agcacttccg
      601 gctggtgctg cgactggtgc tgcgaggggg ccaggagctg ggcactttcc acagtcgcct
      661 catcaaggtg atctccaagc cctcgcagaa gaagcagtcg ctgaaaaaca cagacctatg
      721 catctcctcc ggctcaaagg tctccctttt caatcgcctg cgctcccaga cagtgtccac
      781 gcgttacctc tctgtggaag atggggcctt tgtggccagc gcaaggcagt gggctgcctt
      841 caccctccac ctggctgatg ggcactgttc ccaaggggac ttcccacccc aggaaggtta
      901 catccgctac ggctccctgg tgcagcttgt ctgcactgtc acaggcatta cactgccgcc
      961 tatgatcatc cgaaaagtgg ccaagcagtg tgccctcctt gatgtggatg aacccatatc
     1021 ccagctgcac aagtgtgcct tccagtttcc aagtgacacc ccaggagggg ctggcaccta
     1081 cttatgcctt gccacagaga aggtggtgcg attccaggct tccctctgcc ccaaggaggc
     1141 caacagggcg ctgctcaacg acagctcttg ctggaccatc attggcacgg agtcggtgga
     1201 gttcaccttc agcaccagcc tggcctgtac tcgggagccc gtcactccgg tgcctctcat
     1261 cagcactctg gagctgagcg gtggaggtga tgtggccacg ctggagctgc acggagaaaa
     1321 tttccacgct gggctcaagg tgtggttcgg agacgtggag gcagaaacca tgtacaggag
     1381 ccctcgttcc ttggtgtgcg tagtgccaga cgtggcggcc ttcggcagcg actggcgttg
     1441 gctccgcacc cccatcaccg tgcccgtgag cttgctgcgc gcggatgcgc tcttctaccc
     1501 cagccccttc tctttcacct acaccccgga atacagcgcg ctgccacggc tgcccaacgc
     1561 gcaagagcct gcccccgacg cggacacgct cctggagagc atccaccacg agttcacacg
     1621 caccaacttc catctcttct gccccaccta ggcagtgcca ctgaggctga ctccaggccc
     1681 gcagctgtcc ctcagggaaa aagagcagga aggagagaga tagctcacct gacctcaggc
     1741 cactcactgt cctcagacat acagtaactg tcttcaatca tgagtgacgt tctaatgtct
     1801 tcacggcgtg gcgtgcttcc tgtttttgtt accttataga tttattcttc cgcttttgtc
     1861 tctttctggc tcttcctggg tcggtgaccg gttctgagga tccaagccta ttggggattt
     1921 gctctccaga catctgtgtc cccacttgaa aacaagttgc atgaagtaag actagaatgt
     1981 ctagggccct gatcccatga ggtccctctt agagctaggc gtctatctgc ctgtggtgac
     2041 actctctatg gcaccctcgc ctgggtttgg tctctgatca ctatcccatg acattaatgt
     2101 caggcagagg cctaggacgg ctctcttcac tgtcccaagg ccacttctcc ttcaggaccc
     2161 agaggaagag cctaaggcta aagatcctcc tgtatccagg tacaggtgac tgggaaacac
     2221 tgtgctgggg acagggatgg caaggtgcaa ggctgagtgc tccccggatt ccatccaaac
     2281 cagagtctga tggagctggc acctttatga ctctctgcgg agaagaaatg gggttctaag
     2341 gcagcagata ccctaagcct agaggctacc ttggcagcca gcaactagct atacccccat
     2401 gccaagtatc ttagttagtt agggttttac tgctgtgaac agacaccatg accaag
//
