LOCUS       NM_011254               2628 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus retinol binding protein 1, cellular (Rbp1), mRNA.
ACCESSION   NM_011254 XM_906693
VERSION     NM_011254.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Queen,R., Crosier,M., Eley,L., Kerwin,J., Turner,J.E., Yu,J.,
            Alqahtani,A., Dhanaseelan,T., Overman,L., Soetjoadi,H., Baldock,R.,
            Coxhead,J., Boczonadi,V., Laude,A., Cockell,S.J., Kane,M.A.,
            Lisgo,S. and Henderson,D.J.
  TITLE     Spatial transcriptomics reveals novel genes during the remodelling
            of the embryonic human arterial valves
  JOURNAL   PLoS Genet 19 (11), e1010777 (2023)
   PUBMED   38011284
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2628)
  AUTHORS   Lee,D.R., Rhodes,C., Mitra,A., Zhang,Y., Maric,D., Dale,R.K. and
            Petros,T.J.
  TITLE     Transcriptional heterogeneity of ventricular zone cells in the
            ganglionic eminences of the mouse forebrain
  JOURNAL   Elife 11, e71864 (2022)
   PUBMED   35175194
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2628)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2628)
  AUTHORS   Dani,N., Herbst,R.H., McCabe,C., Green,G.S., Kaiser,K., Head,J.P.,
            Cui,J., Shipley,F.B., Jang,A., Dionne,D., Nguyen,L., Rodman,C.,
            Riesenfeld,S.J., Prochazka,J., Prochazkova,M., Sedlacek,R.,
            Zhang,F., Bryja,V., Rozenblatt-Rosen,O., Habib,N., Regev,A. and
            Lehtinen,M.K.
  TITLE     A cellular and spatial map of the choroid plexus across brain
            ventricles and ages
  JOURNAL   Cell 184 (11), 3056-3074 (2021)
   PUBMED   33932339
REFERENCE   6  (bases 1 to 2628)
  AUTHORS   Ruberte,E., Friederich,V., Morriss-Kay,G. and Chambon,P.
  TITLE     Differential distribution patterns of CRABP I and CRABP II
            transcripts during mouse embryogenesis
  JOURNAL   Development 115 (4), 973-987 (1992)
   PUBMED   1333403
REFERENCE   7  (bases 1 to 2628)
  AUTHORS   Harnish,D.C., Jiang,H., Soprano,K.J., Kochhar,D.M. and Soprano,D.R.
  TITLE     Retinoic acid receptor beta 2 mRNA is elevated by retinoic acid in
            vivo in susceptible regions of mid-gestation mouse embryos
  JOURNAL   Dev Dyn 194 (3), 239-246 (1992)
   PUBMED   1334737
REFERENCE   8  (bases 1 to 2628)
  AUTHORS   Mark,M.P., Bloch-Zupan,A., Wolf,C., Ruberte,E. and Ruch,J.V.
  TITLE     Involvement of cellular retinoic acid-binding proteins I and II
            (CRABPI and CRABPII) and of the cellular retinol-binding protein I
            (CRBPI) in odontogenesis in the mouse
  JOURNAL   Differentiation 48 (2), 89-98 (1991)
   PUBMED   1663469
REFERENCE   9  (bases 1 to 2628)
  AUTHORS   Smith,W.C., Nakshatri,H., Leroy,P., Rees,J. and Chambon,P.
  TITLE     A retinoic acid response element is present in the mouse cellular
            retinol binding protein I (mCRBPI) promoter
  JOURNAL   EMBO J 10 (8), 2223-2230 (1991)
   PUBMED   1648481
REFERENCE   10 (bases 1 to 2628)
  AUTHORS   Graham,A., Maden,M. and Krumlauf,R.
  TITLE     The murine Hox-2 genes display dynamic dorsoventral patterns of
            expression during central nervous system development
  JOURNAL   Development 112 (1), 255-264 (1991)
   PUBMED   1685115
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC144809.2 and
            AC117214.3.
            
            On Nov 17, 2006 this sequence version replaced NM_011254.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X60367.1, BC018254.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2091              AC144809.2         6381-8471           c
            2092-2270           AC144809.2         5801-5979           c
            2271-2372           AC117214.3         88529-88630
            2373-2628           AC117214.3         90235-90490
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 51.36 cM"
     gene            1..2628
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /note="retinol binding protein 1, cellular"
                     /db_xref="GeneID:19659"
                     /db_xref="MGI:MGI:97876"
     exon            1..2091
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             2019..2426
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /EC_number="2.7.7.1"
                     /note="CRBP-I; mCRBPI; cellular retinol-binding protein I"
                     /codon_start=1
                     /product="retinol-binding protein 1"
                     /protein_id="NP_035384.1"
                     /db_xref="CCDS:CCDS23424.1"
                     /db_xref="GeneID:19659"
                     /db_xref="MGI:MGI:97876"
                     /translation="MPVDFNGYWKMLSNENFEEYLRALDVNVALRKIANLLKPDKEIV
                     QDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEK
                     EGRGWTQWIEGDELHLEMRAEGVICKQVFKKVH"
     exon            2092..2270
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2271..2372
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2373..2628
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2606..2611
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /note="hexamer: AATAAA"
     polyA_site      2628
                     /gene="Rbp1"
                     /gene_synonym="Crbp; CRBPI; Rbp-1"
                     /note="major polyA site"
ORIGIN      
        1 ggatccactc tcagctcagc aacagaccag ggcttactgt ccctactgtg tgtcaagcac
       61 tacatgagac tttggcataa accatctcag gaggttcatc tcagggcaca aagggaagtg
      121 gctggagagg atgaaggact ttggacttgt tggggagtgg atggtggaag aaacgtttgc
      181 ttagctttca agcctccaga gacccaaacc tccattccag tgaatcagga tgacaacgaa
      241 gctgtgtgcc ttggctgccc ctcacacaat gtcttacact agatgatttg ggccaaagtg
      301 cctgaagaag tggcttccca cacctttacc ttacacaggc ctgggacagg cagtcttgac
      361 tgcccaacct gagttctgta ctaactgggg aggggacaca gggccaggat ctagataaca
      421 atcggatgcc ctgagcatgc cagagcagac aaaggacaga ccaaggctgt gatgggaatc
      481 caactgtggc cctcaaccag ggtgggtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
      541 tgtgtgtgtt ttctaacccc agaacttaaa aatatctgga gatatctttg cagaacttta
      601 ggggaccagg accagcagtg ctactgaaaa tcttctaaga ttcatttcga taaggctgag
      661 gatgagagtc cctggtgttc agcaagagag tccctgagag agtaaggagg gctaaaattc
      721 caacctttct cccagaggac acttgcctac cctgatggtg tgccctttag tcatttagct
      781 gggggaggca tggttctgca ctgagaagaa agcataccag atctcattcc acaggctcct
      841 aggctctgat ctgttggggg gaggggggga atttaaagaa atatttagtc tttagtaggt
      901 caaaaggtca gacactgaat gtcatctctt tgtaacacac aggtagcagg tgagaaggga
      961 taaaggtctt cactgctact gttgccaatg gcaacaagga tcagaagcca cggaacacgc
     1021 ccaccccctc ccccaccccc tccccgaccc aggtaaatag gagctgaagc tagtaataga
     1081 agcttacaga aatactgggg agtctttccg tgcacaggta tggaaagggc ccagaatata
     1141 ttaactgaaa aaaaaaaaaa accacaaact gtaaattcca gaaaaggtct gtgctttcct
     1201 ttcctggaag aagacagaac cacacgatcc cgcagaatag tgtcagtcca cacgcgcaaa
     1261 aagccttggg tctctgacca ccaccgtgca tgggttcacc tggagcgctt tcttgtccag
     1321 tgcatattta ataccaccaa cttcgcatca tttcctggga gagctgtggg tagttgctct
     1381 gctcttcatc cctagagtta aaacatcagc ttcctaggaa ctggccaggc cacggatgct
     1441 gagctttaga caaaggcctg taaatggcct cttccttgat gacgctagca aacctgaagg
     1501 agacgcgttt tcaacactca agaggcgttt gaagaactcc caggggggta ccggtgagaa
     1561 ttccaggcgt ttgaagaact ctcaagggaa gtaaggaggg ggtacacaaa aactaggacc
     1621 aaaagcaacc tttccccttc cacacctcct ctttctaggc taggaggggt tgggtgaaaa
     1681 gagcaaatgg aaggtctgaa ctgaaagtgg ccaacagcag ggacaaacct ggctctgcac
     1741 catcttcgcc cccgcccctc ccgccccctg ccccgccccg ccccgatccc cgctccgccc
     1801 tctcaccctg ggaggaggga tcgctacaat ggaccctcct gcgggctttg tgcactcttg
     1861 gaatccagct gtcgccgccc cgcggagccc cgtgtccccc gagggcgccc atttccgggc
     1921 cgtccatcac ccggagtgca ttggcagcaa ccgtccgggc cgaacccaca gccgctcccg
     1981 ccttcttggt gtcaggcgat ccccagtctg tcccaaaaat gcctgtggac ttcaacgggt
     2041 actggaagat gctgagcaat gagaatttcg aggagtacct gcgcgcgctc gacgtcaacg
     2101 tggccttacg caaaatcgcc aacttgctga agccagacaa agagatcgtg caggatggcg
     2161 accacatgat catccgcacg ctgagcactt ttcggaacta tatcatggac ttccaagttg
     2221 ggaaggagtt tgaggaagat ctgacaggca tagacgaccg caagtgcatg accactgtga
     2281 gctgggatgg tgacaaactc cagtgtgtgc agaagggaga gaaggaggga cgtggctgga
     2341 cgcagtggat cgagggtgat gaacttcacc tggaaatgag agctgagggt gtgatctgca
     2401 agcaagtgtt taagaaagta cactgagcag cccgaacagc ccgaggagat aaccttggtc
     2461 ttcaggaaca agtgggatgg gcctgtggtc aggagccccc tctgcctaac atggggaccg
     2521 aaacgcatac ccaccccagg cttctgccag cgaagtctct ctctttgcct ggtctctttt
     2581 ccttttctta aaatgaagcg accccaataa aagtgatctc tgtttaaa
//
