LOCUS       NM_001270512            1580 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein Y-linked family member 9
            (Rbmyf9), mRNA.
ACCESSION   NM_001270512 XM_001475806
VERSION     NM_001270512.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Szot,M., Grigoriev,V., Mahadevaiah,S.K., Ojarikre,O.A., Toure,A.,
            von Glasenapp,E., Rattigan,A., Turner,J.M., Elliott,D.J. and
            Burgoyne,P.S.
  TITLE     Does Rbmy have a role in sperm development in mice?
  JOURNAL   Cytogenet Genome Res 103 (3-4), 330-336 (2003)
   PUBMED   15051956
  REMARK    Erratum:[Cytogenet Genome Res. 2004;105(1):160]
REFERENCE   3  (bases 1 to 1580)
  AUTHORS   Turner,J.M., Mahadevaiah,S.K., Elliott,D.J., Garchon,H.J.,
            Pehrson,J.R., Jaenisch,R. and Burgoyne,P.S.
  TITLE     Meiotic sex chromosome inactivation in male mice with targeted
            disruptions of Xist
  JOURNAL   J Cell Sci 115 (Pt 21), 4097-4105 (2002)
   PUBMED   12356914
REFERENCE   4  (bases 1 to 1580)
  AUTHORS   Elliott,D.J., Ma,K., Kerr,S.M., Thakrar,R., Speed,R., Chandley,A.C.
            and Cooke,H.
  TITLE     An RBM homologue maps to the mouse Y chromosome and is expressed in
            germ cells
  JOURNAL   Hum Mol Genet 5 (7), 869-874 (1996)
   PUBMED   8817321
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AC163691.4.
            
            On Jul 13, 2012 this sequence version replaced XM_001475806.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                AC163691.4         41932-42003
            73-185              AC163691.4         45060-45172
            186-292             AC163691.4         45620-45726
            293-470             AC163691.4         46840-47017
            471-623             AC163691.4         48637-48789
            624-732             AC163691.4         49595-49703
            733-813             AC163691.4         51072-51152
            814-902             AC163691.4         52583-52671
            903-1580            AC163691.4         52853-53530
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="Y"
                     /map="Y"
     gene            1..1580
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /note="RNA binding motif protein Y-linked family member 9"
                     /db_xref="GeneID:100041505"
                     /db_xref="MGI:MGI:3781554"
     exon            1..72
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            73..185
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1219
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /note="RNA binding motif protein, Y chromosome, family 1
                     member; RNA-binding motif protein 1; rNA-binding motif
                     protein, Y chromosome, family 1 member B"
                     /codon_start=1
                     /product="RNA-binding motif protein, Y chromosome, family
                     9"
                     /protein_id="NP_001257441.1"
                     /db_xref="CCDS:CCDS85842.1"
                     /db_xref="GeneID:100041505"
                     /db_xref="MGI:MGI:3781554"
                     /translation="MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRE
                     TKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFS
                     RTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRD
                     GPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSND
                     RKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYG
                     RFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPID
                     REYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI"
     exon            186..292
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            293..470
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            471..623
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            624..732
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            733..813
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            814..902
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1580
                     /gene="Rbmyf9"
                     /gene_synonym="100041505; Gm3376; Rbmy1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcattttgga gtcggagttg ttgcaggacg gtgtgatcca ttaaagctga gaaaatagaa
       61 aatcaagaaa agaaaaatgg cagaaactga tcagcctggg aaaattttta taggaggcct
      121 caacataaag accagacaaa agacacttca agaaatattt gggagatttg gaccagtagc
      181 acgtgttatt ttgatgagag atcgtgaaac taagaagtct agaggctttg ctttccttac
      241 tttccgacgc cctgcagatg ctaagaatgc tgtcaaagaa atgaatggag tgattttgga
      301 tggaaaaaga attaaagtaa aacaagccag gagaccatca tcacttgaaa gtggtagcaa
      361 gaagagacca ccatcctttt caagaaccag aggtgcttca agaattctga aatgtggaag
      421 aggaggaaga agcagagcaa gaagtggtcc ttcatgtgaa gggaacttgg gtggtgatag
      481 atatactcct aatttcaatg tgagttcttc tgggagacac tttgcagtta aaagaaatcc
      541 atcttcaaaa agggatggtc ccccttctaa aagatctgca acttctgctc agacaagaag
      601 caatactgga ctaagaggac gagaaccaca tcgaagagag atttctagaa atatgccaag
      661 aggagagccg gcgtcttcca gaagagatga gtatccatta ccaagggatt atggccagtc
      721 ttctaatgat aggaaatatg aatcaacatc cagaggatac tgtgactatg gcaattacca
      781 ctctcgggaa gaaagtgcat ctaaagtctt cagtgatcat gctggctatc ttggaggacg
      841 tgatagagat ttctctgaat atttaagtgg aaattcatac agagatacat acagaagtta
      901 tggaagattc catgaggcac catctgcaag aggtggaaac aaccgctatg atgactatag
      961 taactcacaa gatggatatg gtggaagagg agaaccatac ataagcaacc gaagtaacat
     1021 atactcaagt gactatgaac gtagtggtag acaagaagtg cttccaccac ctattgatag
     1081 ggaatacttt gaccgtgagg gcagacagga aagagggcat tcacctaagg atgggctgta
     1141 tagtgcatct cgtgaatcat acagtagtaa taccaagatt tgggggatcc catggaggtc
     1201 gtggagaaag cagatataaa gtggaggcag gtactaaagt cttaagttgt gtaccaaaca
     1261 gcatttctaa gaagaaaaat aagatgttat tcctatgttc tccaaatgtt aaaagaaata
     1321 tgttgattta ggagataagg caaatagtaa gttttactgc cttacccgaa tacggaaata
     1381 cattgttttg gggggaagtg aaataatgac taacattcca cccatgaatt cttctagaac
     1441 ataaaacaag gaaactttaa ctgttcagaa atgattcttt gttaagaaag acttgttaat
     1501 gttaaagtag aatttaccag tagagatgaa gtatttgcat agtcaaaaac aatctgtcaa
     1561 taaaaagtaa agcaaagcca
//
