LOCUS       NM_001141981            2213 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 43 (Rbm43), transcript
            variant 2, mRNA.
ACCESSION   NM_001141981
VERSION     NM_001141981.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Phillips,R.L., Ernst,R.E., Brunk,B., Ivanova,N., Mahan,M.A.,
            Deanehan,J.K., Moore,K.A., Overton,G.C. and Lemischka,I.R.
  TITLE     The genetic program of hematopoietic stem cells
  JOURNAL   Science 288 (5471), 1635-1640 (2000)
   PUBMED   10834841
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929026.10.
            
            On Sep 21, 2017 this sequence version replaced NM_001141981.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1-6 all encode the same isoform (b).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC003333.1, SRR7345562.4104741.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-332               AL929026.10        78645-78976         c
            333-456             AL929026.10        76213-76336         c
            457-646             AL929026.10        73473-73662         c
            647-726             AL929026.10        70494-70573         c
            727-2213            AL929026.10        68261-69747         c
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 29.98 cM"
     gene            1..2213
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /note="RNA binding motif protein 43"
                     /db_xref="GeneID:71684"
                     /db_xref="MGI:MGI:1918934"
     exon            1..332
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            333..456
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             454..1485
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /note="isoform b is encoded by transcript variant 2;
                     RNA-binding protein 43"
                     /codon_start=1
                     /product="RNA-binding protein 43 isoform b"
                     /protein_id="NP_001135453.1"
                     /db_xref="CCDS:CCDS16030.1"
                     /db_xref="GeneID:71684"
                     /db_xref="MGI:MGI:1918934"
                     /translation="MASAWKVKDPTVAERTVVVSGLPVGLLKDQLVKCYFQDEGGHVE
                     EVIYPSKSKGVAYIIFKEKKVAQDFIRQKKHPPGSEPRLTVSHFSEKVFNYVMAILDL
                     SVFRTQIELESLVVDLKKKIPTLNFSPLGPSGKISVQGSFLAIMKLKQALISKAISPL
                     ENNRKDAGERRNWNGENPRRILQKRENSASILGTFVAEPAGSPETLVLDTDIFLYLKH
                     KCEFYHLTLSKYHVLCQERVDGDVTTICLQDAQDGSCSGSVRHVKEFIEECAQEFHLE
                     LRKELLVLEGMGDREKRNIRQALEELGGRYPRVLTNVHSTHIDLIGPPSDTYLFKTQL
                     MKSAGQKVT"
     exon            457..646
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            647..726
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            727..2213
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2186..2191
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /note="hexamer: AATAAA"
     regulatory      2191..2196
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      2203
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
     polyA_site      2213
                     /gene="Rbm43"
                     /gene_synonym="0610033I05Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagaatgcgc tggagagacg gggcaaagcc taggaatgag tttggagaga agcccagatg
       61 cccctggggc atcttgcaca ggtacctcaa aggcgccaag ggaccgaccc agccgggctc
      121 cgcccttcca aactgagtct ccaaggaaac ggaactggaa agcgaaagcg gaacccgttc
      181 acctccagtt tagcgctccc gctgctcgaa catctccgag gcctggcaag tcgcttttcc
      241 ccgggttgca gtgcaggaag gcgcgccgag ggtcccggag cacgtgtcct gcgcggtcgc
      301 gcgccccgaa gtggccgtca cgggcgcagc agataggatc tgtgtgccat ctcatcgtct
      361 tgactcagca accgggtgaa aggcagagat tctgagaccg tgcatcttct ggaccatcac
      421 caccactggc ttagtcattt tctgaatccc gctatggcat cagcgtggaa ggtcaaagat
      481 cctacagttg ctgagagaac agttgtagtc tctggacttc cagttggcct tttaaaggac
      541 cagttagtga agtgctactt ccaagacgag ggtggacatg tggaagaggt gatatatcca
      601 tcaaaatcca aaggagttgc gtatatcatc ttcaaggaaa agaaagttgc acaagacttc
      661 atcagacaaa agaaacaccc tccaggctca gagcctcggc tcacagtctc tcacttcagt
      721 gaaaaggtct tcaactatgt gatggccatt cttgatctgt ctgtttttcg cactcaaatt
      781 gagctagaaa gcctagtagt ggacctgaaa aagaaaatcc caactttaaa ctttagccca
      841 ttgggaccca gtgggaaaat ctctgtgcaa ggttcatttc tggccatcat gaagctcaaa
      901 caggctttga tatcaaaagc catttcccct ttagaaaaca acaggaaaga tgctggtgaa
      961 aggagaaact ggaatggaga gaaccctaga aggatcctgc agaaaaggga gaactcggcg
     1021 tcgatacttg ggacctttgt agctgagcct gccggcagcc cagaaacact tgtgcttgac
     1081 acagacattt tcctttatct gaaacacaag tgtgagtttt atcatctaac actgagcaaa
     1141 taccatgtcc tgtgtcagga gagggtggat ggtgacgtca ctaccatttg tctacaagac
     1201 gcccaggatg ggtcttgctc tggcagcgtc agacatgtga aagaattcat tgaagagtgt
     1261 gcccaggagt tccaccttga gctcagaaaa gagctactgg ttttggaagg aatgggagat
     1321 agagagaaaa gaaacattag gcaggcttta gaagaactgg gtggcagata tcctagagtt
     1381 ttgaccaacg ttcacagcac acatattgat cttataggac ctccttccga cacataccta
     1441 tttaagacac agctcatgaa atctgcgggg caaaaggtca cttgaagtct cagccacagt
     1501 tatcatggtc acttcccctg ccccttcccc atctaaggta taggagaaga taagatttac
     1561 agatatgaaa ctacttattc aaagttgccc agcagacaac aactgggact agcattgaat
     1621 aaaaagtaat gtctaaatca aaccttgaaa agagaactca ctaaatgttg aagcaatctc
     1681 actttccctc caaatctaaa attattagga aaagaagtct tcccctgcat aggtttgtat
     1741 gacttttagg ctgttgctag cttcttgggt tttacattca ccccacccca cacagcatta
     1801 gaatgttggt caagctcacc tgggaagctg tggttctgtt agaattgtgg gggaatcttg
     1861 ggagaagtct gtgcagtggc ttttgtgggt ggttcttgct ttacgatagt gtggcgtcca
     1921 gatgagcatt gtaagttgaa aacactgtga atcagcaatg ccgttaatcc aagtaatgtg
     1981 cagaacaccc tagacttgcc aaactgccca cagtgaagaa aggactgctt accctggttg
     2041 ctgcgttgac tgacagctca ggctcgctgc tgctgctgct gctctgcact gctagagagc
     2101 attgtactgt ggatcagcac ttgcctggaa aagattcaat gtctcaagta tgatttctac
     2161 tgactcttta ttcctcttgc accataataa agtaaaactt acagaaaatt aaa
//
