LOCUS       NM_133693               1701 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 42 (Rbm42), mRNA.
ACCESSION   NM_133693
VERSION     NM_133693.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Zheng,S., Damoiseaux,R., Chen,L. and Black,D.L.
  TITLE     A broadly applicable high-throughput screening strategy identifies
            new regulators of Dlg4 (Psd-95) alternative splicing
  JOURNAL   Genome Res 23 (6), 998-1007 (2013)
   PUBMED   23636947
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Fukuda,T., Naiki,T., Saito,M. and Irie,K.
  TITLE     hnRNP K interacts with RNA binding motif protein 42 and functions
            in the maintenance of cellular ATP level during stress conditions
  JOURNAL   Genes Cells 14 (2), 113-128 (2009)
   PUBMED   19170760
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY350471.1, AK151000.1, AK013929.1 and BY551742.1.
            
            On Mar 12, 2009 this sequence version replaced NM_133693.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC009148.1, AK013929.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                BY350471.1         90-178
            90-1078             AK151000.1         2-990
            1079-1694           AK013929.1         1020-1635
            1695-1701           BY551742.1         495-501
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 18.95 cM"
     gene            1..1701
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /note="RNA binding motif protein 42"
                     /db_xref="GeneID:68035"
                     /db_xref="MGI:MGI:1915285"
     exon            1..291
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             152..1588
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /codon_start=1
                     /product="RNA-binding protein 42"
                     /protein_id="NP_598454.2"
                     /db_xref="CCDS:CCDS52179.1"
                     /db_xref="GeneID:68035"
                     /db_xref="MGI:MGI:1915285"
                     /translation="MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAE
                     MALFEQEVLGAPVTGIPTAVPAVPTVEAMQVPPAPVIRPIIATNTYQQVQQTLEARAA
                     AAATVVPPMVGGPPFVGPVGFGPADRGHLDSPEAREAMFLRRAAVAPQRAPILRPAFV
                     PHVLQRADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGS
                     MAALRPPLEEPAAPRELGLGLGLGLKDKEEAVVAAAAGLEEASAAVAVGAGGAPAGPA
                     VIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLM
                     ALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND
                     DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI
                     KLRKSMWKDRNLDVVRKKQKEKKKLGLR"
     exon            292..427
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            428..512
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            513..587
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            588..653
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            654..829
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1162
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1280
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..1475
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1701
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1675..1680
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1695
                     /gene="Rbm42"
                     /gene_synonym="1700003D06Rik; 3100004P22Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtggccaagt ctcagcccct gttcttaaac tacgtcctca cgcagcgcat ccgtcgcggt
       61 agtccatacg tcatcggccg gctcccaccc tgagacgaca gggactcgac cgtagaaccc
      121 gctgcggctg ctggaaggag cggtgaaggc tatggcatca gcgatggccg gagcagggcc
      181 ggctccggga ctcccggtgg cgggagggcc ggtggtcccg gggcctggtg tcggcatccc
      241 gggcaagagc ggcgaggaac gcttgaaaga aatggaggcg gagatggccc tgtttgagca
      301 agaagtattg ggagctccgg tgaccggaat cccaactgct gtgcctgcgg tgcccacggt
      361 agaagcgatg caggtccccc cagctcctgt gatccgccca attatcgcca ccaacacata
      421 ccaacaggtc caacagactc tggaggccag ggcagctgct gcagccacag ttgttcctcc
      481 catggtggga ggccctcctt ttgtgggccc agttggcttt ggccctgccg atcgtggtca
      541 cctggacagt cctgaggctc gagaggccat gttcctgagg cgagcagctg tggcccctca
      601 gagggcccct atcctgcgtc ctgccttcgt cccccacgtg ctacagagag cagattctgc
      661 cctttcctct gcagctggtg gcccccgacc tatggccctg aggcctccac accaggccct
      721 ggttggaccc cctctgcctg ggcctcctgg accacccatg atgctgccac caatggctcg
      781 ggcacctgga ccacccctgg gttctatggc tgctctgaga cctcccctgg aagagccagc
      841 agctccacga gagctaggcc taggccttgg tttgggcctg aaggacaagg aagaggcagt
      901 agtggccgca gcggctgggc tggaggaagc tagcgcagca gtggcagtgg gggcaggagg
      961 agccccagct gggcctgcag tcattggccc cagcctcccg ctggccctcg ccatgccctt
     1021 gcctgagcct gagcccttgc ccctcccact ggaggtggta cgtggcctgc tgcctccgct
     1081 gagaattcct gagctcttgt ctctccgtcc acgacctcgg ccccctcggc ctgagcctcc
     1141 tcctggcctc atggccctag aggtgccaga gccactgggt gaagacaaga agaaaggcaa
     1201 gccagagaaa ctgaaacgct gcattcgcac agcagcgggg agcagctggg aggaccccag
     1261 cctgctggag tgggatgccg atgacttccg gatcttctgc ggggatctgg gcaatgaggt
     1321 gaacgatgac atcttggcac gagccttcag ccgcttccca tccttcctta aggctaaggt
     1381 gatccgtgac aagcgcacag gcaaaaccaa gggctatggc tttgtcagct tcaaagaccc
     1441 cagtgactat gtgcgcgcca tgcgagagat gaatgggaag tatgtgggct cacgccccat
     1501 caagcttcgc aaaagcatgt ggaaggaccg gaacctggat gtggtccgta agaagcagaa
     1561 ggaaaagaaa aagttgggcc tcagatagga tctgtggcta agcacccgct cccacccggc
     1621 tgtgcgctag ctcctttcaa cagttgtcca ctcgcctgtc ccaaaaccag tttcaataaa
     1681 ttaccttcat ttccatccct g
//
