LOCUS       NM_153586               5539 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 41 (Rbm41), transcript
            variant 2, mRNA.
ACCESSION   NM_153586
VERSION     NM_153586.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5539)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY125116.1, BC037024.1 and AL672270.12.
            
            On Feb 5, 2010 this sequence version replaced NM_153586.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon and
            uses an upstream start codon, compared to variant 1. The resulting
            isoform (2) has a shorter and distinct N-terminus, compared to
            isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC037024.1, AK084629.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                BY125116.1         3-46
            45-2826             BC037024.1         12-2793
            2827-5539           AL672270.12        16283-18995         c
FEATURES             Location/Qualifiers
     source          1..5539
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 61.35 cM"
     gene            1..5539
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /note="RNA binding motif protein 41"
                     /db_xref="GeneID:237073"
                     /db_xref="MGI:MGI:2444923"
     exon            1..96
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1330
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     RNA-binding protein 41"
                     /codon_start=1
                     /product="RNA-binding protein 41 isoform 2"
                     /protein_id="NP_705814.1"
                     /db_xref="CCDS:CCDS41147.1"
                     /db_xref="GeneID:237073"
                     /db_xref="MGI:MGI:2444923"
                     /translation="MKRVNSCVKDEEHVLEELETEGERQLKSLLQHQLDTSVSIEECV
                     SKKKSFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHV
                     SGEKRTKLRATPEAIQKRLEDIKERISERQRILCLPQRFSKSKQLTRREMEIEKSLFQ
                     GTDRHSFLKALYYQDEPPKKNKGDPMNNLEHFYRETIMKKRLEEFQLLRGESFACHSL
                     VSAASVSGSGTAEKPSLLQDKGKQAAQGKGPRLHVAKLIDFPTEQYWTGPKTLKQPIE
                     FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQE
                     KKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKSKKQQS
                     AVQRSSLITSAPDGRTEINGS"
     exon            97..213
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            214..406
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..611
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            612..1015
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1163
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..5539
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5514..5519
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5536
                     /gene="Rbm41"
                     /gene_synonym="D330023I21Rik"
                     /note="major polyA site"
ORIGIN      
        1 tcatcacctt tgagtctgcc gcacagattg ctgggagttg aggtctcctt cctatttacc
       61 caagttagtg ataggggcct gcggaaacat gaagagggta aatagctgtg tgaaggatga
      121 agaacatgtc ctggaggaac tggaaacaga aggtgagagg cagctcaaga gcctccttca
      181 acatcaactc gatacctctg tctccattga agaatgtgtc tctaagaaaa agagctttgc
      241 gcctgggact atgtacaagc cctttgggaa ggaagcagct gggacaatga ctttgtccca
      301 gttccagaca ctacatgaaa aagaccagga aactgcttct ctcagggaat tagggctcaa
      361 tgaaactgaa atattgatct ggaaaagcca tgtttccggt gaaaagagga caaagctgag
      421 ggcaactccc gaagcaatac agaaacggct tgaagatatt aaagaaagaa tctcagagcg
      481 ccagcgcatc ctttgcctgc cacagaggtt ttcaaagagc aaacagctga cccgaagaga
      541 aatggaaatt gagaagtctt tatttcaggg aactgatcgt cactccttcc ttaaggctct
      601 ttattaccaa gatgaacccc caaagaagaa caaaggtgac cccatgaaca acctggaaca
      661 tttttaccgc gagactataa tgaaaaagcg tcttgaagag ttccaacttt tgagaggtga
      721 atcctttgct tgccactcac tggtctcagc tgcatccgtg agtggtagtg gcacagctga
      781 gaagccatca ctcctccagg acaagggaaa acaggcagca cagggtaaag gccccaggct
      841 ccatgtggca aagcttattg attttccaac tgagcaatat tggactgggc ctaagacgct
      901 gaagcaacca atagaattta tcccagaaga tgagatccag agaaatcgtt tgtcagagga
      961 ggagatccga aacattccta tgttttcttc atataatcca ggggaaccaa acaaggtgct
     1021 atatctgaag aaccttagtc ctcgggtgaa agaaagagac cttatctcat tattcgctcg
     1081 attccaggag aagaaaggac cacccattca gttccgaatg atgactggac gcatgagggg
     1141 gcaagctttc ctcacctttc ccaataaaga catagcatgg caagcactgc accaaattaa
     1201 tggatataaa ctctatggga aaatattggt gatagagttt gcaaagagca aaaagcaaca
     1261 gtcagctgtt cagcgctctt cccttataac atctgctcct gatggcagaa cagaaatcaa
     1321 tggcagctag gaattcgtat ctacacacat gtacatgcac atttggatat atgtatgtaa
     1381 atgaatattc agatgatttt tcttttctca tttcttagat caagaatatg taaattcata
     1441 aaaatttgtt gaaaattgaa gaggaaatat aagaaagaaa ttaggacagt tgctctcagc
     1501 atttggagag aattgataaa agtattttct ttttttaaga tatatttatt tattttatgt
     1561 atgtgagtac agtgtagctg tcttcagaca caccagaaga gggcatttga tcccagtata
     1621 gatggttgtg aaccaccatg tgattgctgg gaattgaact caggacctct ggaagagcag
     1681 tcagtgctct taacctctga gtcatctctc caccctaaaa agtattttct ataattaaat
     1741 actgtatagt attgaaaaag attgtataaa attgacaata tcctgggtgt taaagataat
     1801 aatgaaacac tatatatggc agaaaatacc ctgaggggta agaccatgtg aaaaccttta
     1861 attctcagga tacattacat aggactgttc ctaaagatcc caaaaatcct ttaataattt
     1921 tgtagtcttc agtgtttagt cctagagata agactttttc taggagtgtt tcctgtatac
     1981 gaagttttaa aactaaccca gtgttaaaat atttctttac tgaactcaaa ctgtgttttg
     2041 tcagaacctt caacagtttc agtaggtaga ttcataagtt tattaactta atgattgctt
     2101 ccacactaag ttttcagagt cctcaaaagc atatttatta ttatgacatc ttttaaacca
     2161 aaatattggt agtctatgat actattgcat tcaaaacaat atccattaaa catggagtat
     2221 ctgtctaatg tatgaacttt caagacaaat gaactagcat ctatattaaa gggacaggaa
     2281 agaaagttct ttagaggaaa ggcagcctgc ctcaaattcc ctagtgattc gtttatagtt
     2341 gttgaagaag aagaagaacc taaatggttt agacggtaga accagctttg gagtcagacc
     2401 tgtgaccctc aaagtcaccc atgtttacca tcctgagctt agaaagtcac tcactctgag
     2461 cctcatttat ctcatctata aaaagtaaca ttgcttctga cctccctgag taagggttaa
     2521 atgagattat aatatccaag gtattatatt atattatatt atattataac aaggggaaaa
     2581 atgaacttta gggtactcca ctaagtacat caaacaacat ataataagaa tttcattcaa
     2641 aagcgagaaa gaagcataaa atactacaaa aggtcgagtg aaatggctca gtgagtaaag
     2701 gcatttgcca ccaaacagga agacctgagt tcaaaccctc agacctgcca ataataggac
     2761 aaaaaggctg ggaaataatg ctatagtttc tttaaaaatc ctgtaaatcc ataggaacaa
     2821 ataaaacaaa agggaaataa ggtggctaaa ttttactagg ctgtaaacct aattctgctt
     2881 cctagaagta acagaattat attggtagtt gtactgttct gttagcccta cagtgtgttg
     2941 aaagagttcg catggctgag gaaagggaaa caaaaatgct agagataaag atccactttg
     3001 tgtttaaaag gttggtgttt taagatgtga gaattttaat cacatatttt cataactaca
     3061 gagccctcaa ataacctgaa acaaggtagc aaacaaagta aagaatgaaa ggagaaacag
     3121 gcacatctcc aaactggtgg gtactcagtg tctccttcct aatacaagta ctgctgcaca
     3181 gttgataaac aaggaagtag ccagtttcag cactggatgc tggatagatc tgaaagacag
     3241 ctctagaata tagctctact agaatatata tattttatcc catgtatatg aaacatcttt
     3301 aggctagatc atgaactgaa ccacaaaaca ggccttaata aatacaaatg gactaaagtc
     3361 ttgtcaaaca tgttctcttc cacatggaag aaggttacac atcagtacca ataaatcggg
     3421 aaactcacag ataagtgaaa attagtgata acttaaagac caagtcggtc aataaagaag
     3481 cgggagagat ggctcagtgc ataagagtac ttactgctct tgcagaggac ctgagtttga
     3541 tcctcagcat ccacactgat ggttcccagc tacctttgtc tatatatggg atatgcttag
     3601 agataagcct attcaatgag aagaaagacc gtgtaacagt aattcacttc atatcttaag
     3661 ccataggaaa ataatagcaa actacaccta gaacaaacaa aaaggggaaa acatgcaaaa
     3721 tgcctgagaa tagagtacaa gagagaaaat gcaaggaatc caagcgagaa actggcaagc
     3781 cttttgctac atacagcagg aagaggtaga atgtaatcat tagtttgaga aataaaggag
     3841 ggaatgttgc tactgacctt tgaaaaatag aaggtgtgtg agggagtact gttgtactca
     3901 tgtgtcaata gattaaccta ctaaaaatga acaaatccct aaaaagataa agtaccaaga
     3961 accaaatata ggaagccaga atcgacctac taacaaatag gttaaagaag tcacaagaca
     4021 gataagccac aacaatacct atacttaagt tgctttagat ttgaaatcta gagttctact
     4081 aaatgtttaa taaaacagta atccagtttc ttcacatgct gtttattaag aaaataagga
     4141 atacttctga gatataccac cacatgggag aaccctgaga gtatgttcag ggaaagaagc
     4201 cagtcactgg tgaggacaaa atgtgcaatt ccatatatat gtcaagtaca gagttggttt
     4261 aaaaagtgca tatatatgta gtaataaatg gtaggcaaga aaagctagag tgttcataaa
     4321 ttacatcagt ggttgtataa caatgaacat accaagtggg tgaatgttgt ggtatgtgaa
     4381 ttaaatctca gtgaaactca aaaacatagg aacttggaca ttatccaaat gtccacctgt
     4441 caacatgagt gacttttaac tgatggcaca tccatttagt tgggtattat gaagccatta
     4501 aaacagtaga ctagatctat gaatatattg tgacctctac tcatatccaa gattttatat
     4561 taagttataa gctaagatac atgtatgtat gtatttatgt atgtttgtat gtatgtatgt
     4621 aacacatttt taagcaaata gttcatgtgt atagtttgta gagataattt caaaacaaat
     4681 ataggaataa aataggaaat gtatataacg ggctgtaaac cttctgcaag tgactccgta
     4741 caagctaaaa acaaaacacc tccaccttgg aaacattttt aggtggtatg atttggagcg
     4801 atttttacct ttttcactac tttttaatta aagtaatttt taaatattct tacaaacact
     4861 tggcttccaa aatattagtc agacctactc tgagggtttc tgactttact caggacaaac
     4921 ttgtattcat ttgctatatt gctcacgcga ttaacacttc aatttctcct agagtttaag
     4981 gggtgggacg tgaaggagcc accctggtta cagcctcttg cacatgttac cctgggctac
     5041 acttctcagc caggtttccc ggaagggact gcttcctctc aggtgggcag ccttacctcc
     5101 tccttgctag acctgcagac cacttaaaaa tggagacaat ctaatcgagg gtacctttca
     5161 actggtgcag agatagagaa attggtgtat cccgacagca agattctact cagcaataac
     5221 aaactaagga accatatatg caacaacttg gatacatctg aaatgtattt tgctaagtag
     5281 aagaagccag actcaaacgg ctgcttactg ttatatttca tttgtgttgt tttctggaaa
     5341 ggatgaagca ataaggcaga aaaagcagta gacaccaagt atcggcacaa gggatttctt
     5401 tttaataata ggaactttct ctgtgttatt tatagttaca atgtgtatgt gtttgttaaa
     5461 actcagagaa ttatgcaaca aaagaatgga ttttaatgtg tgaatttttt aacaataaaa
     5521 gtaatttttg atgaaatag
//
