LOCUS       NM_019547               1787 bp    mRNA    linear   ROD 30-DEC-2022
DEFINITION  Mus musculus RNA binding motif protein 38 (Rbm38), mRNA.
ACCESSION   NM_019547
VERSION     NM_019547.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Zhang J, Kong X, Sun W, Wang L, Shen T, Chen M and Chen X.
  TITLE     The RNA-binding protein RBM24 regulates lipid metabolism and
            SLC7A11 mRNA stability to modulate ferroptosis and inflammatory
            response
  JOURNAL   Front Cell Dev Biol 10, 1008576 (2022)
   PUBMED   36478739
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Spruce T, Plass M, Gohr A, Ray D, Martinez de Lagran M, Rot G,
            Novoa A, Burguera D, Permanyer J, Miret M, Zheng H, Swanson MS,
            Morris Q, Mallo M, Dierssen M, Hughes TR, Pernaute B and Irimia M.
  TITLE     The X-linked splicing regulator MBNL3 has been co-opted to restrict
            placental growth in eutherians
  JOURNAL   PLoS Biol 20 (4), e3001615 (2022)
   PUBMED   35476669
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1787)
  AUTHORS   Sun W, Laubach K, Lucchessi C, Zhang Y, Chen M, Zhang J and Chen X.
  TITLE     Fine-tuning p53 activity by modulating the interaction between
            eukaryotic translation initiation factor eIF4E and RNA-binding
            protein RBM38
  JOURNAL   Genes Dev 35 (7-8), 542-555 (2021)
   PUBMED   33664057
REFERENCE   4  (bases 1 to 1787)
  AUTHORS   Mayere C, Neirijnck Y, Sararols P, Rands CM, Stevant I, Kuhne F,
            Chassot AA, Chaboissier MC, Dermitzakis ET and Nef S.
  TITLE     Single-cell transcriptomics reveal temporal dynamics of critical
            regulators of germ cell fate during mouse sex determination
  JOURNAL   FASEB J 35 (4), e21452 (2021)
   PUBMED   33749946
REFERENCE   5  (bases 1 to 1787)
  AUTHORS   Li N, Du H, Ren R, Wang Y and Xu Z.
  TITLE     Alternative Splicing of Cdh23 Exon 68 Is Regulated by RBM24, RBM38,
            and PTBP1
  JOURNAL   Neural Plast 2020, 8898811 (2020)
   PUBMED   32774357
  REMARK    GeneRIF: Alternative Splicing of Cdh23 Exon 68 Is Regulated by
            RBM24, RBM38, and PTBP1.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1787)
  AUTHORS   Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P,
            Eppig JJ, Solter D and Knowles BB.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   7  (bases 1 to 1787)
  AUTHORS   Li XY, Cui XS and Kim NH.
  TITLE     Transcription profile during maternal to zygotic transition in the
            mouse embryo
  JOURNAL   Reprod Fertil Dev 18 (6), 635-645 (2006)
   PUBMED   16930510
REFERENCE   8  (bases 1 to 1787)
  AUTHORS   McKee AE, Minet E, Stern C, Riahi S, Stiles CD and Silver PA.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   9  (bases 1 to 1787)
  AUTHORS   Fetka I, Radeghieri A and Bouwmeester T.
  TITLE     Expression of the RNA recognition motif-containing protein SEB-4
            during Xenopus embryonic development
  JOURNAL   Mech Dev 94 (1-2), 283-286 (2000)
   PUBMED   10842088
REFERENCE   10 (bases 1 to 1787)
  AUTHORS   Pazzaglia S, Pariset L, Rebessi S, Saran A, Coppola M, Covelli V,
            Moody J, Bouffler S, Cox R and Silver A.
  TITLE     Somatic cell hybrids for high-density mapping of chromosome 2
            breakpoints in radiation-induced myeloid leukemia cell lines from
            inbred mice
  JOURNAL   Mol Carcinog 27 (3), 219-228 (2000)
   PUBMED   10708484
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AI573584.1, AK162141.1, DV653380.1 and DV644612.1.
            
            [WARNING] On May 19, 2023 this sequence was replaced by
            NM_019547.3.
            
            On Mar 24, 2007 this sequence version replaced NM_019547.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085307.1, AK146026.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                AI573584.1         19-45
            28-1128             AK162141.1         1-1101
            1129-1570           DV653380.1         216-657
            1571-1787           DV644612.1         50-266
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2"
     gene            1..1787
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /note="RNA binding motif protein 38"
                     /db_xref="GeneID:56190"
                     /db_xref="MGI:MGI:1889294"
     exon            1..369
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..852
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /note="RNA-binding region (RNP1, RRM) containing 1; seb4
                     mRNA; ssDNA-binding protein SEB4; RNA-binding
                     region-containing protein 1"
                     /codon_start=1
                     /product="RNA-binding protein 38"
                     /protein_id="NP_062420.2"
                     /db_xref="CCDS:CCDS17139.1"
                     /db_xref="GeneID:56190"
                     /db_xref="MGI:MGI:1889294"
                     /translation="MLLQPACSPSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTT
                     DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKA
                     NVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPATPV
                     PSLSSPYLEYTPASPAYAQYPPATYDQYPYAASPAAATSFVGYGYPAAVPQALSAAAP
                     AGTTFVQYQAPQLQPDRMQ"
     exon            370..493
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /inference="alignment:Splign:2.1.0"
     exon            494..548
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /inference="alignment:Splign:2.1.0"
     exon            549..1777
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1; Seb4; Seb4l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaggcggcc ggcagctcgc agggcgcgga gtagacgctt cgcggcggac ggagaagcgg
       61 cgcgggacag cgtggggaac tcggattcgg cctgggacac ccccgcatgc gccggccggc
      121 tcggtagcgg cggccccgat gctgctgcag cccgcgtgct ccccgagtgt gtttccgcgg
      181 ccgtccgccg cccccagcgc catgcacggc tcacagaagg acaccacgtt caccaagatc
      241 ttcgtgggcg gcctgcccta ccacaccacc gacgcatcgc tcagaaagta cttcgagggc
      301 ttcggagaca tcgaggaggc cgtggtcatc accgaccgcc agaccggcaa gtcccgcggc
      361 tacggcttcg tgaccatggc agatcgggca gcggctgata gggcttgcaa agaccctaac
      421 cctatcatcg atggtcgcaa ggccaatgtg aacctggcct acctgggtgc caagcctagg
      481 agcttacaga cgggctttgc tgttggtgtg cagcaactac accccacctt gatccagcgc
      541 acctacgggc tgactcctca ctacatctac ccaccagcca ttgtgcagcc cagcgtggtg
      601 atccctgcca cccctgtccc gtcactgtcc tcgccctacc ttgagtatac accagccagc
      661 ccagcctacg cccagtaccc gccagccact tacgaccagt acccatatgc tgcctcacct
      721 gctgcagcca ccagcttcgt gggctacggc taccctgctg ccgtgcccca agccttgtct
      781 gctgctgcac ctgcaggcac caccttcgtg cagtaccagg cacctcagct acagcctgac
      841 aggatgcagt gatgcgcgtc ctgcccaggg ccacagctgc cacctgccag cctctggagc
      901 caccaccatt tgggtctcct caggcccccg ggcccacctg ccctgaaggc agcagcaagt
      961 ttcttctgca gccctgccgt gcttgaggaa gggcctgagg aggaagggac actcactctg
     1021 gaagctctgc agccactccg tgccaggtgc cttaactctg ggacgtgtac agacgtcctc
     1081 cctcctcttt gggaactgtc ctcttggtgg atccgggttc ctgaccccac ctccccccag
     1141 ttgcccctca gtcgaagcac tgtgccatgt cctgctggga attttctgcc atgcaggcaa
     1201 gaccatcagc accgagaacc ccaaacctgt tttgtactta gagactggct ttggtcagta
     1261 gttcactgtg gagacaatga cagtattctc tgtgccagtg tcgctgatgg agctccccct
     1321 ccccacaggg ctgccattac cagaccacgg ccctgcaggg ccctgggctc ctgtctgctg
     1381 atgctgcccg cctcacctgc agaggtgccc atcagggcga gttctcaggt gtctgttgct
     1441 gtgccatggg ggccttcttc ctggccctgt gcccctcaag caggctctgc ccacccaccc
     1501 tcccgttgtc acctgtgcca gtctgaccta gctgcacaga gagaaggtcc agcccacgtc
     1561 taggagggga ggagtgggta tctctggcag catgggctgc ccgcaggctg ggcagtgggt
     1621 ccctccacac ctacctcagg gagccagtgt gcgggcggga actccacagc atgcctgtta
     1681 gtcaaggcct ggaggacaga gggagtaatg ttataataat atttttatta gaatgttctg
     1741 attataaaaa ataaaacttg ttttctttaa agaaaaaaaa aaaaaaa
//
