LOCUS       NM_172762               3402 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus RNA binding motif protein 34 (Rbm34), transcript
            variant 1, mRNA.
ACCESSION   NM_172762
VERSION     NM_172762.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 3402)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC141278.1 and AC119874.12.
            
            On Feb 28, 2019 this sequence version replaced NM_172762.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078099.1, SRR7652917.1088896.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2056              BC141278.1         20-2075
            2057-3402           AC119874.12        164393-165738       c
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 74.64 cM"
     gene            1..3402
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="RNA binding motif protein 34"
                     /db_xref="GeneID:52202"
                     /db_xref="MGI:MGI:1098653"
     exon            1..60
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..1339
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="isoform 1 is encoded by transcript variant 1;
                     RNA-binding protein 34"
                     /codon_start=1
                     /product="RNA-binding protein 34 isoform 1"
                     /protein_id="NP_766350.2"
                     /db_xref="CCDS:CCDS22787.1"
                     /db_xref="GeneID:52202"
                     /db_xref="MGI:MGI:1098653"
                     /translation="MALGGEERKRRKGSERRQSSGDGVSCAASDYLVGQVADSLRGGP
                     RPPGGGTGRLAALFSTAEPSAPPVFVPVPQETSKKRKLDDDDDDEEESVSQTKKPVLQ
                     EPSRKVKVKKLSDADKRLANRESALASADLEEELHQDQGQGRRRRSQSRGKVADGEAL
                     DVALSLAKDGGQRTKIPVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESV
                     RFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFR
                     IRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGF
                     GYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRL
                     NFTSKEGKFHSKEGKFHSKNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ"
     exon            61..232
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            233..378
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            379..619
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            620..679
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            680..723
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            724..807
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            808..871
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            872..911
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1030
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..3402
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1523..1528
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="hexamer: AATAAA"
     polyA_site      1550
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="major polyA site"
     regulatory      3369..3374
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="hexamer: ATTAAA"
     polyA_site      3393
                     /gene="Rbm34"
                     /gene_synonym="4930547K05Rik; 6330444B11; D8Ertd233e"
                     /note="major polyA site"
ORIGIN      
        1 agttttcagc atggctctgg gaggggagga acgcaagaga aggaagggct cggagcggag
       61 acagagctct ggagacggcg tgagctgtgc ggccagcgac tacctggtgg gacaggtcgc
      121 cgacagcttg cggggcggcc cgcggcctcc tggaggcggg acggggcggc tggccgctct
      181 cttcagcacc gcggagccat cggctcctcc tgtatttgtg cctgtgcccc aggaaacatc
      241 taaaaaaaga aaacttgatg atgatgatga tgatgaagaa gagagtgtgt cccaaactaa
      301 aaagccagtt ttgcaagagc cttcgagaaa agtgaaagtg aagaaactct ctgatgcaga
      361 caaaagactg gcaaacaggg aaagtgctct agcaagtgct gatctagaag aagagcttca
      421 tcaggaccaa gggcagggaa gaaggagaag gtctcagtct cggggtaaag tggcagatgg
      481 agaagcactg gacgttgccc tcagccttgc taaggatggg ggccaaagaa caaaaatccc
      541 agtcaacccc gaagaggagc ggttaaaaaa cgagaggact gtgtttgttg gcaatttgcc
      601 tgtcacatgt aataaaaaga agctgaagtc attttttaaa gagtatggac aagtagaatc
      661 cgtacgattt cgttctgtga tgccagcaga ggggacacta accaagaagt tggctgcaat
      721 aaaacgtaaa tttcatcctg accagaaaag catcaatgca tatgtagtgt tcaaggatga
      781 gagcgccgct gcaaaagctc tgcaaagaaa tggggcccag attgcagaag gatttcgtat
      841 tcgagttgat ctggcatctg aaacggcctc tagggacaag agatcagtat ttgtggggaa
      901 tcttccttac aaaattgaag actctgcttt ggaggaacac tttctggact gtggaagcat
      961 cgtggcagtg aggatcgtga gaaacccact tacaggagtc ggcagaggat ttggctatgt
     1021 gctctttgag aacacagatg ctgttcatct tgctttgaag ttaaataatt ctgagctaat
     1081 gggaagaaaa ctgagagtca tgcgttctgt taataaagaa aaactaaaac aacagaattc
     1141 aaatccaagc ttgaagaagg atgtcattaa acctaagcaa agacttaatt ttacttccaa
     1201 agaaggaaaa ttccattcca aagaaggaaa attccattcc aagaatgcat ttattggaga
     1261 aaaggcagtt ctcatgaaaa agaaaaagaa aggacaaaag aaaaaagtac aaatgaagaa
     1321 accaagaaaa cagcagtaat aactgaggtt gcctcctttc tgtggtgaaa ccttgcaatg
     1381 agtgtctggg ttttttatgg attatgtaga aaatgtggag gcatccacgg tgtctggttt
     1441 ttgtttttgt ttttttttta attcatgcta tatgtaaggc ttctttgaag ccttgttctt
     1501 agaaatgtat ttaaagaaaa ataataaaca ttaatactct gtgtttagga taagtgttca
     1561 aatggtcact gtgagaatac tgattccagg tatagtcaca gtccctaaga aagacttgtg
     1621 agctgtgtaa aacacacacg cacattcttc acttctcatt tttctttctc ttgcaattgt
     1681 agtatagatc tacatttctt atcccatata tctaataatt gctaaccaat aagactgata
     1741 ggataagagt gactatcttc taattcgttg ccagtgacta cagtggtcaa tgatgtcctt
     1801 ggctattagg tgtgtgtgtg tgtggagggg ggggtgctca taagaaaaat actcttccag
     1861 gaaaatgtga tgcttaaatt agtatcactc agaatgaaac agctgtccca gaaagtttaa
     1921 agacagcatc taataaatga tgttaattaa actgcagtct ttaaagttga atgacatgac
     1981 aacatggtgc tgcattccct aagttccaga cacatcttac caagctgggg ctggatccag
     2041 gatgaagtgg gggaagcagg aagccaaggc tgattcaggc aggcagagtc cagtaggcaa
     2101 gagggtagga taagttttca ctcttttagt tgtaaaagtt ctgtctttgg gaaatgccat
     2161 gtagaaaacc taatgaggtc tttaaaacat agctctaggg gctggagaga tggctcagca
     2221 gttaagaata ctgactgctc ttccaaaggt cctgagttca aatctcagca accacatagt
     2281 agctcgcaac catccgtaat gagatctgat gccctcttct gttgtttgtt tgtttgagac
     2341 agggtttctc tgtatagcct tggctgtcct ggaactcact ttgcagacca ggctgacctt
     2401 gaactcagaa atccgcctgc ctctgccccc caagtgctgg gattaaaggc gtgcgccacc
     2461 atgcctggct gatgctctct tctggaatgt ctggatacaa ctacagtgta cttacacata
     2521 aataaatctt aaacaaaaaa caaacaaacc ccatagctct agaggctgga gagttggttt
     2581 cttggttaag agcatgcact gctcttcaga gtacctaagt tcaattccta gtacccacgt
     2641 caagcagttc acaactgtct gtaacttgag ctcctaggtc caactcctct agtctcccca
     2701 gactttgtgc actttttcac taacataacc tacacacaca tatatacaag taaaaaataa
     2761 aagtgtgggg ctggagagat ggctcagtgg ttaagagcac tgactgttct tctagaggtc
     2821 ctgagttcaa ttcccagcaa ccacatggtg gctcacaacc atctgtccga tgcactcttc
     2881 tgctgtgtgt ctgaagtcag ctaccgtgta ctcacattaa ataaatatta aaaaataaat
     2941 aaaagtgtgt agcttttaca gcagagaaag ctctatttcc tgtatccaag actggataat
     3001 ttatggttgg ttttccttac agtatttaga accttttcag ttaaatttca gcaattttac
     3061 ctgatcactc tggagcattt ttgcataaac tatataaaga tgtaacatta gattgtgcgt
     3121 gcatatataa tctatgtaca acttacagct cctgtgagtg agcaggttat atacatgcat
     3181 agatgtaact ttatttaata tgtgtatgat gtgaatgtgg aggccagaag aaaactctgg
     3241 agttttctcc ttccaaagca tggactcact cagccatctc actggcccta gatactttgg
     3301 aattcggtac tgtgtaactg ttgaaattcc tcctttagaa tgtgtgtgct actatgattg
     3361 tgtaaatcat taaaaaatgt attttgtagg aaattttcta aa
//
