LOCUS       NM_133925               4201 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus RNA binding motif protein 28 (Rbm28), mRNA.
ACCESSION   NM_133925
VERSION     NM_133925.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4201)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4201)
  AUTHORS   Cajigas,I., Chakraborty,A., Lynam,M., Swyter,K.R., Bastidas,M.,
            Collens,L., Luo,H., Ay,F. and Kohtz,J.D.
  TITLE     Sox2-Evf2 lncRNA-mediated mechanisms of chromosome topological
            control in developing forebrain
  JOURNAL   Development 148 (6) (2021)
   PUBMED   33593819
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4201)
  AUTHORS   Cajigas,I., Chakraborty,A., Swyter,K.R., Luo,H., Bastidas,M.,
            Nigro,M., Morris,E.R., Chen,S., VanGompel,M.J.W., Leib,D.,
            Kohtz,S.J., Martina,M., Koh,S., Ay,F. and Kohtz,J.D.
  TITLE     The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially
            Organizes Megabase Distant Genes in the Developing Forebrain
  JOURNAL   Mol Cell 71 (6), 956-972 (2018)
   PUBMED   30146317
REFERENCE   4  (bases 1 to 4201)
  AUTHORS   Lumayag,S., Haldin,C.E., Corbett,N.J., Wahlin,K.J., Cowan,C.,
            Turturro,S., Larsen,P.E., Kovacs,B., Witmer,P.D., Valle,D.,
            Zack,D.J., Nicholson,D.A. and Xu,S.
  TITLE     Inactivation of the microRNA-183/96/182 cluster results in
            syndromic retinal degeneration
  JOURNAL   Proc Natl Acad Sci U S A 110 (6), E507-E516 (2013)
   PUBMED   23341629
REFERENCE   5  (bases 1 to 4201)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4201)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 4201)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK167050.1, AK161670.1, AK087628.1, AA212598.1 and AW123167.1.
            
            On Jan 30, 2008 this sequence version replaced NM_133925.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK156773.1, AK167050.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-910               AK167050.1         2-911
            911-2601            AK167050.1         913-2603
            2602-2738           AK161670.1         2572-2708
            2739-3216           AK087628.1         264-741
            3217-3712           AA212598.1         26-521
            3713-4201           AW123167.1         1-489               c
FEATURES             Location/Qualifiers
     source          1..4201
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 12.33 cM"
     gene            1..4201
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /note="RNA binding motif protein 28"
                     /db_xref="GeneID:68272"
                     /db_xref="MGI:MGI:2655711"
     exon            1..234
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..2369
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /codon_start=1
                     /product="RNA-binding protein 28"
                     /protein_id="NP_598686.2"
                     /db_xref="CCDS:CCDS51733.1"
                     /db_xref="GeneID:68272"
                     /db_xref="MGI:MGI:2655711"
                     /translation="MAGLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKAC
                     RGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEP
                     KHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQ
                     FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESG
                     KKNCRVEEQVEDSDDEEDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDDSY
                     EDSDLEEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVFIRNLSF
                     DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG
                     GGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSA
                     ADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEATRGEKGVR
                     IKECRVMRDLKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVE
                     FSLEDRRKLKVKELRIQRSLQKMESKPVTSKPQKEQKEVGKDKQQKVVQSATQDQSKA
                     PGEQKGKAGSTSWSGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKSL
                     PSRKPKPQMGQRKQKKQQLASSVQAPKRKAKENKAEARFNQLVEQYKQKLLGPSKGAP
                     LMKRSKWFDS"
     exon            235..393
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            394..488
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            489..564
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            565..657
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            658..729
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            730..892
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1032
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1105
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1215
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1289
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1290..1425
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1426..1490
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1649
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1650..1799
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1800..1874
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2131
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2132..2234
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2235..4186
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2718..2723
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /note="hexamer: AATATA"
     polyA_site      2745
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /note="major polyA site"
     regulatory      4166..4171
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4186
                     /gene="Rbm28"
                     /gene_synonym="2810480G15Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaggacttcc tgaatttccc ggcaactcgg caccgccttc ctgccagagc tcatcccagc
       61 cctcgctcgc gccggcgtga ggtgctcgca gcctcacgcg cttgtctctc ggtctcatgg
      121 ccggtctgac tttattcgtg ggccgtctcc cgccctcggc tcgcagcgat cagctggaag
      181 agctgttcag tcaggtgggt ccggtgaagc agtgcttcgt ggtgacagag aaagggagta
      241 aggcatgccg aggctttggc tacgtgactt tctccatgct ggaagatgtt cagagggccc
      301 tcaaggagat cactaccttt gaaggttgta agatcgatgt gactgttgcc aagaaaaaac
      361 tgaggaacaa gtccaaggaa acgagaaaaa atgaaaatgc agagtcccca aagaaggagc
      421 caaagcacaa aaaagccaaa gtggcagata agaaagccag attaattatc cggaacctca
      481 gctttaagtg ttcagaagat gacttgaaag cggtatttac tcactatgga actgttcttg
      541 aagtgaatat cccaaagaag ccagatggaa agatgcgtgg ttttgctttt gttcagttca
      601 aaaacctcct tgaagcagga aaagctctca aaggcgcgaa tatgaaggag ataaaaggac
      661 ggactgtggc tgtggattgg gctgtggcaa aggacaaata caaagatgcc cagcatgctt
      721 ctgccccagg tgtaaagaag agcagtgacc ggaagcctaa ggaatcaggt aagaagaact
      781 gcagggtgga agaacaagta gaagatagtg atgatgaaga agatgatgat agccatgatg
      841 acgaagaaga aagagaatca acaatagctt ctcctgtgag tgtgcacaag agagcagtca
      901 agagagcagc tcccgaggaa agcatcgagg aagacgactc ctacgaggac agtgacctgg
      961 aggaaggagg cagctcctat gatgagggga cagtggacag tgagagcagc gctgaagatc
     1021 aagaggatga agatgttcca gtctcagaga aaaagaagag gaagttaccc tcggatgtga
     1081 cggaagggaa aactgtcttc atcagaaatc tttcatttga ctcagaagaa gaggcacttg
     1141 gcgaggtcct ccaacagttt ggggatctta agtatgtccg agttgtcttg catccagaca
     1201 cagagcattc taaaggttgt gcattcgcac aattcatgac tcaggaagca gctcagaaat
     1261 gtcttgcagc ggcctctcta gaggctgagg gtggtgggct taaactggac ggccgacagc
     1321 tcaaggtcga cttagctgtg acccgggatg aggcagcaaa gcttcagaca aagaaggtga
     1381 agaagccaac tggaacccgg aacctctatc tggccagaga aggcttgatc cgcgctggga
     1441 cgaaggctgc tgagggtgtg agtgccgcag atatggccaa acgcgagcgg tttgagctac
     1501 tgaaacatca gaaactcaag aaccagaata tctttgtctc gcagaccagg ctttgcctgc
     1561 acaatctccc aaaggctgtg gacgataaac agctaaggaa gctgctgctg gaggccactc
     1621 gaggagagaa gggggttcga attaaggagt gtagagtcat gcgggacctt aaaggagttc
     1681 atgggaaaat gaagggtcag tccctgggct atgcctttgc agagttccaa aagcatgagc
     1741 atgccctcag agccctccgc cacttcaaca acaacccaga gatctttggg tcccaaaaga
     1801 gacccatagt ggagttctct ttagaagacc gaaggaaact taaagtgaag gagctgagga
     1861 tccaacgcag cctgcaaaaa atggaatcca agcctgtgac cagtaagccc caaaaggagc
     1921 aaaaagaagt tggaaaagac aagcaacaga aagtagttca gagcgccaca caggatcaga
     1981 gtaaggcgcc tggagagcag aaagggaaag ccggctccac ctcgtggtca ggcttccaga
     2041 ccaaggctga agtggagcag gtggagctgc ctgacgggaa gaagagaaga aaggtcctgg
     2101 cactcccttc acaccgaggc cccaaaatta ggctgcggga caaaggcaaa gtgaagtccc
     2161 tgccttctag gaagccaaag ccccagatgg gccagcggaa gcaaaagaag cagcagttag
     2221 cgtcttccgt gcaggcgcct aaaagaaagg ctaaggagaa taaggcagaa gcccgcttca
     2281 accagctggt tgaacaatat aagcagaagt tgctgggccc ttctaaagga gcgcccctca
     2341 tgaagagaag caaatggttt gacagctgat ggcacctgca gactgtacaa aagccgtgtc
     2401 tttcactgag ggaagcagat cccagatgat acccactttc ttggggactg taggttgtgt
     2461 acattcatgg tccgttctcc agtgtggtgt tggttagcca cactgaaaaa cactatggag
     2521 tttttataac ttacccaatc acagtgctga gtctgtgatt gcaacttaat ttctaatttc
     2581 ttctcaaatg gaaactattg taaaaaaaaa aaaaaaagtg tttgagagta ctgaattgta
     2641 aagatgcata ttttgttatg gagtctgtaa gtgaggaact atgacttttt ggatgtgtct
     2701 catttttaat atacacaaat atagtatgag ttttttctaa atgaaccttt ttaacatttt
     2761 taaatcggtt acatagtctg taaggactaa gcacagagaa aatgcttact aaagtagtct
     2821 ctgaatgtca gagacactgg gaaacgactg aaggccatgg gcctggcagc aagtggcacc
     2881 tgagaagggt ctgcccccgg aggggaatgg ctggctggga ataagattgc aggctagacc
     2941 ccagcctgac catggatggc ccagatgaat tgcacagagc tccttccccc agggactggg
     3001 agctttctgg tgagaaagca gcgaacttga ggccatgacc taaagcctaa actcttatct
     3061 agtcatgttg aatatgcagt taactaaatg ctctcctggt cactccctgc actacatact
     3121 cttaaacatt cttacctata ctttctcttg cctaaagaaa gctgggggtc tcagagtcag
     3181 ggtctgcaag aattctggtg gtgtgaagag tgggctgttg tgaaagatga agctcactgg
     3241 aggcaaacca acccccgtgc tggacaactc tgacacaaga tgtggagtac actgatagat
     3301 tctgccaccg cagagcctcc tgtctgcccc cttggcctgg agagcgtctc cttaggatca
     3361 tttgtttctc agatctctac tgaaccctca gcttttctgg tgtttccttc agtatctgaa
     3421 atagggctcc tcttacctct ccaacctgac tcctgactgg actctccgac cctgtttgtt
     3481 ttctcttggc actcactaat catcatctca gattatctcc ccattaaaac atctgccttg
     3541 agactttctc ttgtttgccc ttacatagtg gctgtggaat aaatatttac tgaatgaaaa
     3601 agaaaaacaa taacaaagga aaaggagcag tggtagtctg tagaaaaggc tgagaactta
     3661 gcttaacttg cttgggtccc tgacctaatg tgctgattta aagtatgctg tcccaaaata
     3721 tcgctgagcc aagcagagag ctgttttatg gcattgtctt gagaaaacca gcgagtgctc
     3781 cagaaagccc ttgatggcct agaggtagtg aaggaagaaa tcatggaaac atttagactg
     3841 tactggctgg ttttatgttg tcaacttgac acaagctgga gttatcacag agaaaggagc
     3901 ctcccttgag gaaatggctc catgagatcc agctgtaagt cattttctca attagtgatc
     3961 aagcggggag ggccccttgt gggtggtgcc atccctgggc tggtagtcct gggttctata
     4021 agaaagcaag ctgagcaagg caggggaagc aagccagtaa gtaacgtccc tccgtggtct
     4081 ctgcatcagc tcctgtttcc tgacctgctt gagttccagt cctgacttcc tttggtgatg
     4141 aacagcaatg tggaagtgta agctgaataa attctttcct ccccaaaaaa aaaaaaaaaa
     4201 a
//
