LOCUS       NM_026434               2563 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 18 (Rbm18), transcript
            variant 1, mRNA.
ACCESSION   NM_026434
VERSION     NM_026434.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB183820.1, AK035348.1 and BE944155.1.
            
            On Apr 25, 2009 this sequence version replaced NM_026434.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK035348.1, SRR7652917.85157.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                CB183820.1         72-164
            94-2180             AK035348.1         2-2088
            2181-2563           BE944155.1         1-383               c
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 24.19 cM"
     gene            1..2563
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /note="RNA binding motif protein 18"
                     /db_xref="GeneID:67889"
                     /db_xref="MGI:MGI:1915139"
     exon            1..223
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            224..352
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             240..812
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable RNA-binding protein 18"
                     /codon_start=1
                     /product="probable RNA-binding protein 18 isoform 1"
                     /protein_id="NP_080710.1"
                     /db_xref="CCDS:CCDS15969.1"
                     /db_xref="GeneID:67889"
                     /db_xref="MGI:MGI:1915139"
                     /translation="METETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKL
                     LQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVR
                     WAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSNLSVTAKIKAIEAKLKMMAENPDAE
                     YPAAPVYSYFKPPDKKRTTPYSRTAWKSRR"
     exon            353..479
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            480..566
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            567..652
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            653..2548
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2528..2533
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2548
                     /gene="Rbm18"
                     /gene_synonym="2010004P11Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctcaccagct acggccggga ctatagagaa acacacgcgg gacagcggag gtgcgggcgt
       61 catgacgtca cgggccagcg cggcggcgca ggcgtagtgc gtcacgggcg gccaggcggc
      121 gagcggtgtt tcggcagagg taacctcagg tccttcgctc ggaccccagc gtcggaagct
      181 gctttcgggg catgagctga gggcacagct ctgaggctag cagtatttct cagagattga
      241 tggaaacaga aaccaaaact cttcccctgg agaatgcatc catcctttca gagggctctc
      301 tacaagaagg acaccgatta tggattggca acctggatcc caaaatcaca gaataccacc
      361 tcctcaagct cctccagaag tttggcaagg tgaagcagtt tgacttcctc ttccataagt
      421 caggtgcttt ggagggccag ccccgagggt actgttttgt taactttgaa actaagcagg
      481 aagcagaaca agccatccag tgtctcaatg gcaagctggc gctgtctaag aagctggttg
      541 tacgatgggc ccacgctcaa gtcaagagat atgatcataa caagaatgat aagatccttc
      601 ccatcagcct tgagccatcc tcaagcactg agcctgctca gtctaacctc agtgtcactg
      661 caaagataaa agccattgaa gcaaagctga aaatgatggc agaaaatcct gatgcagagt
      721 acccagcagc gcctgtttat tcctacttta aaccacctga taaaaaaagg actactcctt
      781 actctagaac agcctggaag tctcgaagat gatggtcgtg aattaccaga gcagcagaag
      841 caaatggtct ccacgtctga agtccttcgc ctctgtactg tgtagatgtg aatggtacta
      901 ccaacagagc acagtctctt gttagggccg gtgacatagc gtgtttgggt gttcatatgg
      961 atgtgtcttc cctgaactat gtgtgaattg agcatcatcc agaataaata ggaatgtgtc
     1021 cagactgtga tgtgaacact gagatgcgct agttggctgc tttgtttgga tttgtaactc
     1081 cagaaacaca atgtgccaga gagaaaaaca agcatacaac gttgttattt aaatcaggaa
     1141 actaaatgta ttaacatcca ccaaaaactt ttagcatttt tatgtgtaca cttctcttca
     1201 acataaacaa aaaataaggg tgagggtgga aagtgagaga cgtttacagt catttttaga
     1261 actgtttggg aatgtactgt agaaatcctt cagttgaatt caaaagagaa ttcttggcaa
     1321 aaagcagctg atcccttgag tgaatgttgt agcagtctgt ttaagaatta tgcttattat
     1381 ttccaaatct cagttaggaa aatgtggtat acgtcttaaa attgtttatg tcgtcaaagt
     1441 gtagagacac atttaacatt ttataccaca acagatactc tatttggaaa tccagctttt
     1501 attctttggc aatcatggtt ttgaatctga atgaccttgc cttctataat accaaatgtt
     1561 attactaacc cgggttttaa tacacttact gcatgagatt gttttatagc atggggttgt
     1621 tgcagttaga actgtatcat gatcaatcta aatagaaaag cagaatttct ttgaaaacct
     1681 aaagtttgct gtattggtta ctgtcaagca ttactttgtc acagttgtat ggggctgtaa
     1741 gaagcagctg agtgaccttg ttgcagctga gagagaaagt gcagtgagca gcaggagtca
     1801 gcagccggtg ctcaggcatc aagaccgtaa caaccacact cgttctgtcc ttttggaaga
     1861 ccgcacggcc taaaactgaa cgttaccctg aaagcatgct tctctccaga tatctctgtc
     1921 tccttggaga tatgaacatg gtagtataga gacacacata gacagacagc cttgggaatg
     1981 tgtttcttca gctcagtgct gattgaattg gtgccgggcc tgacagactg ttcattagca
     2041 acaccgttct tcactgagca ggtcactgtc gctcaccaca ggtgccaccc atgatgactt
     2101 gggttgtaga gacacttgac ttaacttctg gggtttcaga atccacagaa ctgtttcaga
     2161 ggaattctta ctgcttttcc caagtcggtt ttttagctat ctttagatac tgaatatgtc
     2221 ccagatttat cagttgtgtg tatctgtgat gtgggaaact ctccttccac ttgggagctc
     2281 attcagggaa gtgggaacac cggctcccat ttgtctggtg acttattaga atatagaatt
     2341 caccatttca tccttaagtt ctcaaagggt tgtggtggag tagaatttga tgccaatagc
     2401 cttctatttt taataggaac ctagagaata cttaggatta tctagagttg tttctttaga
     2461 atctagaact atttatttgt atttaaacaa tgtctatgat ttgtaccaat tcttacccct
     2521 ctatgtgaat aaacgcaaga cgacagtaaa aaaaaaaaaa aaa
//
