LOCUS       NM_198957               3457 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript
            variant 1, mRNA.
ACCESSION   NM_198957 XM_355471
VERSION     NM_198957.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3457)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ179945.1, AK080943.1, BB653094.1, BY620336.1 and BC080741.1.
            
            On Mar 22, 2006 this sequence version replaced NM_198957.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK080943.1, BY772097.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                CJ179945.1         3-73
            72-2940             AK080943.1         2-2870
            2941-3157           BB653094.1         15-231
            3158-3224           BY620336.1         116-182
            3225-3457           BC080741.1         3139-3371
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 5.58 cM"
     gene            1..3457
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /note="RNA binding motif protein 12 B2"
                     /db_xref="GeneID:77604"
                     /db_xref="MGI:MGI:1924854"
     exon            1..154
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /inference="alignment:Splign:2.1.0"
     exon            155..219
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /inference="alignment:Splign:2.1.0"
     exon            220..269
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /inference="alignment:Splign:2.1.0"
     exon            270..3426
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /inference="alignment:Splign:2.1.0"
     CDS             298..2802
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /note="RNA-binding motif protein 12B-B"
                     /codon_start=1
                     /product="RNA-binding protein 12B-B"
                     /protein_id="NP_945195.1"
                     /db_xref="CCDS:CCDS17975.1"
                     /db_xref="GeneID:77604"
                     /db_xref="MGI:MGI:1924854"
                     /translation="MAVVIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKVGEAF
                     IIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASG
                     VGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRG
                     LPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG
                     SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRAR
                     SRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQK
                     DYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIECYEKKRPESLEKERPGRVSQKYSQE
                     GFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFK
                     SEEQAMKAERLNRQRFLGIEVLLRLISEEQMQEFGIKSSWLSNERTQACSRSHDGDDC
                     SCLFDLKDPSSCSFGQSESLRYHPKDLRKMGHFKHPQGYFRQSDRCSPEDFRHSPEDY
                     RHPWEEHTSHSREEDWRLPLEDWPQEDDFRQCHEKDHRQLRSPWEEDFRRPSQEHFRR
                     SYQEHIRRPPQEHFRRSREEDFRHVADEDFRQASDEDFRISQEDLRYPTDEDFRRVSV
                     EDLREVPEKDLRLPKNFRSSGEEFWTPPDFRGQHPFVNFDHLQGGKFDFEKYKLENFH
                     DGKFVPDLKFNCGSGGIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLP
                     LGEAIVSMTNYNEALSAVKDLSGRPVGPRKVKLSLL"
     regulatory      3402..3407
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /note="hexamer: AATAAA"
     polyA_site      3426
                     /gene="Rbm12b2"
                     /gene_synonym="C430048L16Rik; Rbm12bb"
                     /note="major polyA site"
ORIGIN      
        1 gcatgagcag agagacggtg catcggtttg tccggaccgg aggggagtgt ggtctccatt
       61 ttcttccggc cgtgttgggc ctggtaggcc gtgcggagac tgcggcgtcg aggagcgtcc
      121 cttctccgtt tgtgtggtgt gtggtgactg cccgcctccg tgtggcggcg agtgagcttc
      181 ctgggatctt gacagcgaaa atctcggagc agcgcctagt taagttgctt ttacagaata
      241 aacaggtctc caagaaataa aaggcaaagg tcattattgc tgtggcttga gctcagcatg
      301 gctgtagtca tccgtttact ggggcttcct tttattgcgg gtcctgtgga tatccgtcac
      361 ttcttcaagg gattgactat tcctgatgga ggagtgcata taattggagg gaaagttggg
      421 gaggctttta taatttttgc aacagatgaa gatgcaagac gtgctataag tcgctcagga
      481 gggtttatca aggattcatc tgtagagctt tttcttagta gcaaggtaga aatgcagaag
      541 accatagaaa tgaaaagaac tgctcgagta ggaagagggc gaccaggatc cggggcatca
      601 ggggttggca acgtgtatca ttttagtgat gctctgaagg aagaagaaag ttattctgga
      661 tatggctctt cggttaatcg agatgctggg tttcatacaa atggtacagg acttgactta
      721 aggccaagaa agaccaggcc attgaaggct gagaatcctt acttatttct acgaggtttg
      781 ccttacttag taaatgaaga tgatgtccgt gtctttttct ctggtttgtg tgtagatgga
      841 gtaattctct taaaacatca tgatggccga aataatggtg atgctatagt aaaatttgct
      901 tcatgtgttg atgcttcagg aggtcttaaa tgccatagaa gtttcatggg ttcaagattt
      961 atagaagtca tgcagggttc agaacaacag tggattgaat ttggtggtac tgcaaccgag
     1021 ggcggtgaca ctcctcgtat gagatctgaa gagcattctc cttcaagaag gattaatggt
     1081 agacattttc ggaaacggtc tcattcaaaa tctcctagag cacgttctcg ctctcctctt
     1141 ggattttatg ttcacttaaa aaatctgtcc ttaaatacta acaaaagaga tttaaggaat
     1201 ctctttagag atactgacct gactaatgac cagattaagt ttgtgtataa agatgaaaga
     1261 agaacacgct atgcctttgt gatgttcaag aatcaaaaag actataatac tgccctgggt
     1321 ttgcataaga ctgttttaca atatcgtcca gtccttattg atccagtgtc taggaaggaa
     1381 atggtgagaa tcattgaatg ctatgagaag aagagaccag agtctttaga gaaggaaagg
     1441 ccaggacgtg tttcacaaaa gtactctcaa gaaggcttct ctggctctgg tcagaagctg
     1501 tgcatatata taagaaattt accatttgat gttacaaagg gtgaagtgca gaagttcttt
     1561 gcagactttt ctcttgttga ggatgacatt tatctgcttt gtgatgacaa gggagttggt
     1621 ttgggagaag cactggtgag atttaaatca gaagaacaag ccatgaaagc tgaacgtttg
     1681 aaccgacaaa gattcttggg gatagaggtg ttgttaagac ttatatctga ggaacaaatg
     1741 caggagtttg gtataaagtc ttcctggttg tctaatgaga ggacacaagc ctgttccagg
     1801 tcacatgatg gagatgactg ttcctgtttg tttgacttaa aagatccgtc atcctgttca
     1861 tttggccagt ctgaaagcct tcgttatcat ccaaaagact taaggaaaat gggtcatttc
     1921 aagcatcccc aagggtattt ccggcagtct gacaggtgct ctcctgagga cttcaggcac
     1981 tccccagaag actataggca cccctgggag gagcatacca gccactctag ggaggaagac
     2041 tggagactgc ctctggagga ttggccacag gaagatgatt ttaggcagtg tcatgagaaa
     2101 gatcataggc agctaagaag cccttgggaa gaagacttca gacggccatc ccaggagcac
     2161 ttcaggagat cctatcagga gcacattaga cggccacccc aagaacattt caggcgttcc
     2221 cgagaggaag atttcaggca tgtggctgat gaagacttta ggcaagcttc tgatgaggac
     2281 ttcaggatct cccaagaaga tttgagatat cccactgatg aggactttag gcgggtgtct
     2341 gtggaagacc tcagggaagt tccagagaag gaccttcgac ttcctaaaaa ttttagatct
     2401 tctggagagg agttttggac cccacctgat ttcagaggtc aacatccctt tgtgaacttt
     2461 gatcatctac aaggtggcaa atttgatttt gaaaagtata aattggaaaa ttttcatgac
     2521 ggaaaatttg ttcctgacct aaagtttaat tgtggttcag gtggaataat tcgtgttatg
     2581 atctcgaatc ttccattcaa agccaatgct aatgaaattc tagacttttt tcatggttat
     2641 aaagtcatcc ctgattccgt ttcaatacag tataatgagg aaggattgcc tttaggagaa
     2701 gctatcgttt ctatgacaaa ttataatgaa gctctatctg cagttaaaga tctaagtggt
     2761 agaccagttg gtccccgcaa agttaagctt agtttgcttt aggaggcctt tttttttttt
     2821 tcctgtttca gtggacatct tccacactcc ccatccccca catagaatgc ctttctaagt
     2881 aaacagtttt cttccacagt attgatgcag tgaaagtata ggttttgttt tttttttttt
     2941 ttaagtttag ttttaattat ttaaaaattt aaaaatgtga ttagaaaaat gtgttatgta
     3001 agtctggttt ccttttattt actaatggac atgcttttat tcaatgattt aaaattgcat
     3061 acattctgtt tttgaaaggg gagattcctg aattcattcg gttcattgat gttataaatt
     3121 cagtcttgtg aaaagtggaa gttatatttg tggaaggtga atttatcttt gattttattt
     3181 taacaactca gaccatataa agaaatgaag gctaactgat taatcaggtt tggcactttt
     3241 attgctactt gcctgtagaa ctgtttgtga agacattgtg ccagtgtctc ctataaacta
     3301 aatagtccag aaaatgaact tactgtgaaa taaaatttac ttatgtgaag ccttaggaaa
     3361 ttctcaatat ttgtgttcac aactttgaaa acttttgtaa aaataaaatt gctcttgaaa
     3421 tacttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
