LOCUS       NM_028226               3313 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 12 B1 (Rbm12b1), mRNA.
ACCESSION   NM_028226
VERSION     NM_028226.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929413.13, BC050844.1, AK013872.1 and BP767112.1.
            
            On Apr 5, 2008 this sequence version replaced NM_028226.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050844.1, SRR1660817.129999.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-457               AL929413.13        41459-41915
            458-1286            BC050844.1         259-1087
            1287-3135           AK013872.1         382-2230
            3136-3269           BC050844.1         2937-3070
            3270-3313           BP767112.1         27-70               c
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 5.58 cM"
     gene            1..3313
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /note="RNA binding motif protein 12 B1"
                     /db_xref="GeneID:72397"
                     /db_xref="MGI:MGI:1919647"
     exon            1..489
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /inference="alignment:Splign:2.1.0"
     exon            490..539
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /inference="alignment:Splign:2.1.0"
     exon            540..3283
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /inference="alignment:Splign:2.1.0"
     CDS             568..3078
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /note="RNA-binding motif protein 12B-A; RNA binding motif
                     protein 12B"
                     /codon_start=1
                     /product="RNA-binding protein 12B-A"
                     /protein_id="NP_082502.2"
                     /db_xref="CCDS:CCDS17976.1"
                     /db_xref="GeneID:72397"
                     /db_xref="MGI:MGI:1919647"
                     /translation="MAVVIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKVGEAF
                     IIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASG
                     VGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRG
                     LPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG
                     SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSPRAR
                     SRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQK
                     DYNTALGLHKTVLQYRPVLIDPVSRKEMVRIIECYEKKRPESLEKERPGRVSQKYSQE
                     GFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFK
                     SEEQAMKAERLNRQRFLGIEVLLRLISEEQMQEFGVKSSWLSNERTQACSRSHDGDDC
                     SCLFDLKDPSSCSFGQSESLRYHPKDLRKMGHFKHPQGYFRQSDRRSPEDFRHSPEDY
                     RHPWEEHTSHSREEDWRLPLEDWKWSQEDDFRQCHEKDRRQLRSPWEEDFRRPSQEHF
                     RRSYQEHIRQPPEEHFRRSREEDFRHVADEDFRQASDEDFRTSQEDLRYPTDEDFRRV
                     SVEDLREVPEKDLRLPKNFRSPGEEFWTPPDFRGQHPFGNFDHLQGGKFDFEKYKFGS
                     FPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQG
                     LPIGEAIVAMTNYNEALAAVKDLSGRPVGPRKVKLSLL"
     regulatory      3247..3252
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /note="hexamer: AATAAA"
     polyA_site      3283
                     /gene="Rbm12b1"
                     /gene_synonym="3000004N20Rik; Rbm12b; Rbm12ba"
                     /note="major polyA site"
ORIGIN      
        1 gattatgcac aaaagcttta tattacctaa ggaaaagcct tcctccagtc ccctaaccac
       61 tgcaagcagc tctatgcatc tctgcacaag tgagtccaga gcgcccctgt tgtgggttgg
      121 atctgaactg cgcatgagca gagagacggt gcatcggttt gtctggaccg gaggggagtg
      181 tggtctccat tttcttccgg ccgtgttggg cctggtaggc cgtgcggaga ctgcggcgtc
      241 gaggagcgtc ccttctccgt ttgtgtggtg tgtggtcact gcccggtgcg aagcacttct
      301 caggatgccg ggcatggggc aagggagggg gtgagagccg gaagcacggg cgtgctgggc
      361 ggggggcgag cgcggctggt gcggttaggg cggcgctcgc tgacccccga cttcctcctg
      421 tcagcctccg tgtggcggcg agtgagcttc ctgggatctt gacagcgaaa atctcggagc
      481 agcgcctagt taagttgctt ttacagaata aacaggtctc caagaaataa aaggcaaagg
      541 tcattattgc tgtggcttga gctcagcatg gctgtagtca tccgtttact ggggcttcct
      601 tttattgcgg gtcctgtgga tatccgtcac ttcttcaagg gattgactat tcctgatgga
      661 ggagtgcata taattggagg gaaagttggg gaggctttta taatttttgc aacagatgaa
      721 gatgcaagac gtgctataag tcgctcagga gggtttatca aggattcatc tgtagagctt
      781 tttcttagta gcaaggtaga aatgcagaag accatagaaa tgaaaagaac tgctcgagta
      841 ggaagagggc gaccaggatc cggggcatca ggggttggca acgtgtatca ttttagtgat
      901 gctctgaagg aagaagaaag ttattctgga tatggctctt cggttaatcg agatgctggg
      961 tttcatacaa atggtacagg acttgactta aggccaagaa agaccaggcc attgaaggct
     1021 gagaatcctt acttatttct acgaggtttg ccttacttag taaatgaaga tgatgtccgt
     1081 gtctttttct ctggtttgtg tgtagatgga gtaattctct taaaacatca tgatggccga
     1141 aataatggtg atgctatagt aaaatttgct tcatgtgttg atgcttcagg aggtcttaaa
     1201 tgccatagaa gtttcatggg ttcaagattt atagaagtca tgcagggttc agaacaacag
     1261 tggattgaat ttggtggtac tgcaaccgag ggcggtgaca ctcctcgtat gagatctgaa
     1321 gagcattctc cttcaagaag gattaatggt agacattttc ggaaacggtc tcattcaaaa
     1381 tctcctagag cacgttctcg ctctcctctt ggattttatg ttcacttaaa aaatctgtcc
     1441 ttaaatacta acaaaagaga tttaaggaat ctctttagag atactgacct gactaatgac
     1501 cagattaagt ttgtgtataa agatgaaaga agaacacgct atgcctttgt gatgttcaag
     1561 aatcaaaaag actataatac tgccctgggt ttgcataaga ctgttttaca atatcgtcca
     1621 gtccttattg atccagtgtc taggaaggaa atggtgagaa tcattgaatg ctatgagaag
     1681 aagagaccag agtctttaga gaaggaaagg ccaggacgtg tttcacaaaa gtactctcaa
     1741 gaaggcttct ctggctctgg tcagaagctg tgcatatata taagaaattt accatttgat
     1801 gttacaaagg gtgaagtgca gaagttcttt gcagactttt ctcttgttga ggatgacatt
     1861 tatctgcttt gtgatgacaa gggagttggt ttgggagaag cactggtgag atttaaatca
     1921 gaagaacaag ccatgaaagc tgaacgtttg aaccgacaaa gattcttggg gatagaggtg
     1981 ttgttaagac ttatatctga ggaacaaatg caggagtttg gtgtaaagtc ttcctggttg
     2041 tctaatgaga ggacacaagc gtgttccagg tcacacgatg gagatgactg ttcctgtttg
     2101 tttgacttaa aagatccgtc atcctgttca tttggccagt ctgaaagcct tcgttaccat
     2161 ccaaaagact taaggaaaat gggtcatttc aagcatcccc aagggtattt ccggcagtct
     2221 gacaggcgct ctcctgagga cttcaggcac tccccagaag actataggca cccctgggag
     2281 gagcatacca gccactctag ggaggaagac tggagactgc ctctggagga ttggaaatgg
     2341 tcacaggaag atgattttag gcagtgtcat gagaaagatc gtaggcagct aagaagccct
     2401 tgggaagaag acttcagacg gccatctcag gagcacttca ggagatccta tcaggagcac
     2461 attagacagc cacccgaaga acatttcagg cgttcccgag aggaagattt caggcatgtg
     2521 gctgatgaag actttaggca agcttctgat gaggacttcc ggacctccca agaagatttg
     2581 agatatccca ctgatgagga ctttaggagg gtgtctgtgg aagacctcag ggaagttcca
     2641 gagaaggacc ttcgacttcc taaaaatttt agatctcctg gagaggagtt ttggacccca
     2701 cctgatttca gaggtcaaca tccctttggg aactttgatc atctacaagg tggcaaattt
     2761 gattttgaaa agtataaatt tggaagtttt cctgatgcaa aagttacctc tgatctaaat
     2821 ttaaattgtg tttcagataa aataattcct gttaagatat ccaatcttcc attcaaagct
     2881 aatgctagtg aaattctaga cttttttcat ggttataaag tcatacctga ttccgtttca
     2941 ttacagtata atgagcaagg attacctata ggagaagcca ttgttgctat gacaaattat
     3001 aatgaagctc tagctgcagt taaagatcta agtggtagac cagttggtcc ccgcaaagtt
     3061 aagcttagtt tgctttagag ggcctttcta agtaaacagt tttcttccac agtgttcatg
     3121 cagtgaaagt aaagtttttt atagagatga aaaattttat ttttaacttg tgaatagaaa
     3181 aaatgtgtta tgtaaatctc gtttcttttt gcttataaat ggacattctt ttacccccta
     3241 attaaaaata aaaaatattc tgttcttgac aggtggaaga gaaaaaaaaa aaaaaaaaaa
     3301 aaaaaaaaaa aaa
//
