LOCUS       NM_198302               2675 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus RNA binding motif protein 11 (Rbm11), transcript
            variant 1, mRNA.
ACCESSION   NM_198302 XM_148735 XM_358874
VERSION     NM_198302.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Pedrotti,S., Busa,R., Compagnucci,C. and Sette,C.
  TITLE     The RNA recognition motif protein RBM11 is a novel tissue-specific
            splicing regulator
  JOURNAL   Nucleic Acids Res 40 (3), 1021-1032 (2012)
   PUBMED   21984414
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2675)
  AUTHORS   Gitton,Y., Dahmane,N., Baik,S., Ruiz i Altaba,A., Neidhardt,L.,
            Scholze,M., Herrmann,B.G., Kahlem,P., Benkahla,A., Schrinner,S.,
            Yildirimman,R., Herwig,R., Lehrach,H. and Yaspo,M.L.
  CONSRTM   HSA21 expression map initiative
  TITLE     A gene expression map of human chromosome 21 orthologues in the
            mouse
  JOURNAL   Nature 420 (6915), 586-590 (2002)
   PUBMED   12466855
REFERENCE   4  (bases 1 to 2675)
  AUTHORS   Reymond,A., Marigo,V., Yaylaoglu,M.B., Leoni,A., Ucla,C.,
            Scamuffa,N., Caccioppoli,C., Dermitzakis,E.T., Lyle,R., Banfi,S.,
            Eichele,G., Antonarakis,S.E. and Ballabio,A.
  TITLE     Human chromosome 21 gene expression atlas in the mouse
  JOURNAL   Nature 420 (6915), 582-586 (2002)
   PUBMED   12466854
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC166995.2.
            
            On Feb 24, 2023 this sequence version replaced NM_198302.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK039297.1, SRR7652917.1239497.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               AC166995.2         53308-53443
            137-299             AC166995.2         56914-57076
            300-372             AC166995.2         58570-58642
            373-469             AC166995.2         59175-59271
            470-2675            AC166995.2         61013-63218
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 43.22 cM"
     gene            1..2675
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="RNA binding motif protein 11"
                     /db_xref="GeneID:224344"
                     /db_xref="MGI:MGI:2447622"
     exon            1..136
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..757
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="isoform 1 is encoded by transcript variant 1;
                     putative RNA-binding protein 11; splicing regulator RBM11"
                     /codon_start=1
                     /product="splicing regulator RBM11 isoform 1"
                     /protein_id="NP_938044.1"
                     /db_xref="CCDS:CCDS37377.1"
                     /db_xref="GeneID:224344"
                     /db_xref="MGI:MGI:2447622"
                     /translation="MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKD
                     RDGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESC
                     AKINSHSFRNDEMAGRPSFPVPFFPITSAALPQEYFFFQKMPWYAHSPVLQPPFCEMP
                     APLPNSVPGSCALNHSPGPEAGPSSYEWTHQPPSDPDLYPRNKRKRQRPDSDSDSSSE
                     DKRGNEGSQKCRKCKKKKRY"
     exon            137..299
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /inference="alignment:Splign:2.1.0"
     exon            300..372
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /inference="alignment:Splign:2.1.0"
     exon            373..469
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /inference="alignment:Splign:2.1.0"
     exon            470..2675
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1094..1099
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="hexamer: ATTAAA"
     polyA_site      1117
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="major polyA site"
     regulatory      1919..1924
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="hexamer: AATAAA"
     polyA_site      1944
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="major polyA site"
     regulatory      2569..2574
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
                     /note="hexamer: ATTAAA"
     polyA_site      2587
                     /gene="Rbm11"
                     /gene_synonym="A330018F01"
ORIGIN      
        1 gcttcggcac ctcctccatc cctggctgcg gaccgcaggg atgttcccgg ctcaggagga
       61 ggctgacagg accgtgtttg tgggcaattt agaggcccga gtgcgggaag agattcttta
      121 cgagctgttc cttcaggctg ggccactaac caaagtgact ctttgcaaag acagagacgg
      181 aaagccgaag tcctttggct tcgtctgctt caagcatcct gagtccgtat cctatgccat
      241 agctctgctg aatggaattc gtttgtatgg gagaccaatt aatgtgcagt atcggtttgg
      301 gagttctcgc tcttctgaac cagctaacca aagttttgag agctgtgcta agattaactc
      361 acacagcttc aggaacgatg aaatggcggg caggccttcc tttcctgtgc cgtttttccc
      421 aattacgagt gccgccttac ctcaagagta ttttttcttt caaaaaatgc catggtacgc
      481 acacagtcca gtgctgcaac cgcctttctg tgagatgcca gccccacttc ccaacagtgt
      541 gcctgggtct tgcgccttaa atcactctcc aggcccagag gctggaccca gctcctatga
      601 gtggactcac cagccaccaa gcgaccctga cctgtatcct aggaataaac ggaagaggca
      661 aaggccagac agcgacagcg acagtagctc agaagacaag agaggaaacg aaggaagcca
      721 aaagtgccgc aagtgtaaaa agaagaaaag atactagcga actgtatctg cactgctctc
      781 aaacctctct agaaaaaaaa aaatctgttg caccaaatga tccatttctt gtccagcttg
      841 tcgtttttga aaacgtatgg aaatatgact ctgtgatttg ctattcagtt tactattcat
      901 gcttatgaat gacaaaagcc ttgaaacagt aatatattgt tgtgcgtttg catttgcaag
      961 attgccttgg gaccattgtc tcacagaaag ctttctacca gcgcaggtgg gctggcctca
     1021 gaggggttgc gggcagaact aatgggaata attaaaaaca gtgtgcttta gtaactatgt
     1081 agcaaggatg ctaattaaaa acagtgtgct ttagtaacta tgtagcaagg atgcttgagt
     1141 tcctgttcta gctgacactc ttccttttta tgtctaaata tggtacctct gagcatccct
     1201 atcacacagt gttgccttta agcatcggac actcaggcta tgacgggaaa gatagttgcc
     1261 atatgctccg tgtcctatgc ttaaaggcaa cactgtgtga ttattcatgt tttctatcat
     1321 ttttatttga tataattatc tgtatacatc acacttcttg tttgtaaggg cactcagttg
     1381 atggtatcag tatctactgt ctaattctcc cagcaagggt gggaaggaca tagtggctgt
     1441 gtgaattgct gcgatgacca agtgtacaga atgatgccgc atatacttaa tgcctattgt
     1501 ccaagtcagt acatttattt cacttatttt agaagataaa tgtaaacatt tcaaatgaat
     1561 ggggtatgtc agcacttttg ttaacttgac ggcttaccat aacctaatga tgaagatatt
     1621 ttatatatat atatttggtt tttcaagaca gggtttctct gtgtagctct ggctgccctg
     1681 gaactcactt tgtagaccag gctggcctcg aactcagaaa tctgcctgcc tctgcctccc
     1741 aagtgctggg actaaaggcg tgtgccacca cgcctggtga agatcatata tctattaaag
     1801 ctaattgaaa ggataatgca aacccattat gaattatcta cccagttcag gagagaataa
     1861 ggcacacgtg ggtgtgacct ttgcatgttg cccactcgtt catacatatt atttaatgaa
     1921 taaaagtatc tttaaccaac agaataactg agttttactc ttggataatg aggatataag
     1981 tggcgattat gacaaataca agcttatctt atataaagac ctaaattacg ctgcatggaa
     2041 ctttaactgg gcttttaaca ttcttaaata ttaaaatatg aaaatgttgg ttttttttct
     2101 tttaaatcca tattttagca atttggaatc atggccaaga taaaattcat tctttcgtaa
     2161 ttatatagca gcacctttaa acatattacc atcatcttct atgttcctcc agttatgaaa
     2221 tttaccacag acataaatta ggccatgtgg ttagcagagc tgggtataag aatgcatctt
     2281 agcaactgag attaatgtgt gtaagaaaat taggttgaag taggacatgc tctaaatgtc
     2341 acaactggga aatgttcttg taactctccc accagagaaa gaaaactaac tcagtatctg
     2401 ctcttaacta gtcagccatt cagctaagca gactgctaag agagtcgatt ttactgtggt
     2461 gtcttttgtt aaagaccagg aaacttcctg taagatgcta agatttgccc caaccccaaa
     2521 attttaagtt gtctattttc caagtgctat agacttggat gaaggattat taaaattctt
     2581 tgcctcacat ggttttcttc tccaatttta atccaccagt ctcagaattg acttcaaatt
     2641 gtaaatgaag ttaataatct aaaaataaaa ctaaa
//
