LOCUS       NM_001045482            3380 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RB-associated KRAB zinc finger (Rbak), transcript
            variant 2, mRNA.
ACCESSION   NM_001045482
VERSION     NM_001045482.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3380)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3380)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 3380)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 3380)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   6  (bases 1 to 3380)
  AUTHORS   Skapek,S.X., Jansen,D., Wei,T.F., McDermott,T., Huang,W.,
            Olson,E.N. and Lee,E.Y.
  TITLE     Cloning and characterization of a novel Kruppel-associated box
            family transcriptional repressor that interacts with the
            retinoblastoma gene product, RB
  JOURNAL   J Biol Chem 275 (10), 7212-7223 (2000)
   PUBMED   10702291
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK051009.1, CN699599.1 and AC123686.11.
            
            On Oct 2, 2013 this sequence version replaced NM_001045482.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF226870.1, SRR1660819.32632.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849387, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-224               AK051009.1         2-225
            225-571             CN699599.1         19-365
            572-2432            AK051009.1         673-2533
            2433-2683           AC123686.11        164079-164329
            2684-3380           AK051009.1         2785-3481
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 81.98 cM"
     gene            1..3380
                     /gene="Rbak"
                     /note="RB-associated KRAB zinc finger"
                     /db_xref="GeneID:57782"
                     /db_xref="MGI:MGI:1927369"
     exon            1..227
                     /gene="Rbak"
                     /inference="alignment:Splign:2.1.0"
     exon            228..284
                     /gene="Rbak"
                     /inference="alignment:Splign:2.1.0"
     exon            285..411
                     /gene="Rbak"
                     /inference="alignment:Splign:2.1.0"
     exon            412..507
                     /gene="Rbak"
                     /inference="alignment:Splign:2.1.0"
     exon            508..3380
                     /gene="Rbak"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcttgcg ctgggccact gcgccgtggt gacttcctgc aggtctggtg tgtcgaggct
       61 accttccctc ccgcagcctt tgcgttcgct aagctggagt tgccgagcct gcagggccga
      121 ggccggagct tccggggcgg cagcgaacag actcggctgt gcgggctagg gaggcctagc
      181 gagagctcgg cgcggaggct gacaggggca gcggagacgc ctgctcggtc agtcagcagt
      241 gtctacagtt cccccaagag gagcagaaca tgagcagatc aaagggccca ctgtcattca
      301 aggatgtggc tgtggccttc tcccaggagg agtggcagca gctggaccct gaggagagga
      361 ccacatacag ggatgtgatg ctggagacct acagcaacct cgtctccgtg gggtatgacg
      421 ttaccaagcc aaacatgatt attaagttgg agcagggaga agagccctgg acagtggaag
      481 gtgaccgcca tgctcagagg catttggaaa tcagtaaagt ttatgacccc agagaaggaa
      541 ttgaggaaat tggcgagaaa catctgcagt gcgatgatga tccctactgc tggagagctg
      601 agaagggggc tgcttttgat gaagcctaca ccctcgaaac agccctcatt tcccccagct
      661 caggtgctca cagctgtgtc tcctgtgggg agaccctgga gtctgtttca gaactgatta
      721 gcagtgacgg aagctatgca ctggagaagc ccagcatgtg ttttgagtgt gggaaagcat
      781 acggagaaag ccttgaagac ttcaaccaag atgagggtaa ctcctctcaa cacgatgaaa
      841 atattttgca gaaagtcacc attttggaga aaccctttgc ttatgagtgc atggaagcct
      901 tagacagtga aagtgttttc atggctcgtg agagagctta catgggggag aagccctatg
      961 actggggaga ctctggacca gacttcatcc agatgtcgga cttcagtaca tatccgagat
     1021 cacaaatgga actgaagccc ttcgaatgta cacagtgtgg gaagtccttc tgtaagaagt
     1081 ccaaattcat catccaccag agagctcaca caggagagaa gccgtacgct tgtagtgtgt
     1141 gtggaaagtc cttcagtcaa aagggaaccc tcactgtaca tcggagatcg cacttagagg
     1201 agaagcccta taagtgtaat gagtgtggga agaccttttg tcagaagtta cacctcacac
     1261 agcaccagag gactcactca ggagagaagc cctatgaatg tagcgagtgc gggaagtcct
     1321 tctgccagaa gacacacctc actctccacc agaggaatca ctcaggcgag aggccctacc
     1381 cgtgtaatga atgtgggaaa tccttctccc ggaagtctgc cctcaatgac catcagagga
     1441 cacacacagg agagaagctc tataagtgta atgagtgtgg gaaatcctac taccggaagt
     1501 ccaccctcat tacacaccag aggacacaca caggggagaa gccctatcag tgtagtgagt
     1561 gtgggaaatt cttctctcgg gtgtcgtacc tcaccataca ctatcggagc catttagaag
     1621 agaaacctta cgagtgtaca gaatgtggga aaaccttcaa tctaaactct gctttcatta
     1681 ggcactggaa ggtccatgca gaagagagag tccaggagtg tggcgagtgt gggaagccat
     1741 ccccgctgca gtgtgcccct gatcacacag gcgacctagg agagaagcgc tatgagtgta
     1801 atgagtgtgg aaagaccttc cttgacagct cggccttcca taggcaccag tccgtccctg
     1861 aaggggagaa aacttacgag tgtaatatat gcggaaagtc cttctcggat tcgtcatgct
     1921 acactgtgca ctacagaggt cattccgaag agaagccctt cgggtgcagt gaatgtggga
     1981 agaccttctc tcataactca tccctcttca gacatcaaag ggtccacacc ggcgagaagc
     2041 cgtacgagtg ttacgaatgt gggaagttct tctctcagaa gtcgtatctc actatccatc
     2101 accggatcca ttcgggagag aagccctacg agtgcagcaa gtgtgggaaa gtgttctcgc
     2161 ggatgtcgaa cctcaccgta cactaccgaa gccattcagg agagaagccg tatgagtgca
     2221 acgagtgtgg gaaagtcttt tctcagaagt cgtacctcac cgtgcattac cggactcatt
     2281 caggagagaa accttatgaa tgtaacgaat gtgggaaaaa attccaccac agatcagcct
     2341 tcaatagcca tcagagaatt cataaaagag gcactgtaaa tgtactcact gtagaaaagc
     2401 tctgacatgc caaggttttt aaattttttt ttggttttgg ttttggtttt tttgaaacag
     2461 ggtttctctg tgtagccctg gctgtcctgg aactcattct gtagaccagg ctggcctcga
     2521 actcagaaat ccgcctgcct ctgcctcccg agtgctggga ttaaaggtgt gtgcaccacc
     2581 actgcccagt gacatctcag ttcttaagaa aagcatttgg ttatagtgaa cattggaagt
     2641 ccaacaggta gtcaagggtg gacccccctc aacccccccc cccaattttc aatatatgtg
     2701 gtgctgggat tctgggcctt ttgcatgcta tagacattct gcaagattca cgagctgagc
     2761 atccacgctc ttgagtgtgg agtcctaaaa caaagtccat tttaacttga gctttcagag
     2821 aggaatctgt gaagcaaccc atgaccgtat gacttatggg acactaggtc atctttacag
     2881 gagtgaacct ttgaaagtat ttaatattta tttttattta aatcgtattt acatatcagg
     2941 gagttctgct gtgagctgtc agctcctgag tataactcgc cttggaaacg cacactaaaa
     3001 gccatatttc tgaccgacgt taccacgggt gttcatggaa aagatgcaag aagctatgag
     3061 ttccgaataa acttataaaa tgaagtcatg aagccagcag ttgagcatga gggtgactga
     3121 aacacggcac ttctgctgtt ctagacacgc aattgaacag tctctatgca atgtttcgca
     3181 atctcggctt tgaatcattt gtgagaacat gtcagcaagg attaaaatga ctgttacagt
     3241 gggtacatgg gtgggatgtg ctagctgata gggaagtaca tagctttcta tgtcggtgct
     3301 tacccgtaga gtggtttttg taaaaatatt ttcaactgga attgagcaaa aaaatttttt
     3361 aaatactatt ttgataaacc
//
