LOCUS       NM_146240               2118 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus Ras association (RalGDS/AF-6) domain family
            (N-terminal) member 9 (Rassf9), mRNA.
ACCESSION   NM_146240
VERSION     NM_146240.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Lee,C.M., Yang,P., Chen,L.C., Chen,C.C., Wu,S.C., Cheng,H.Y. and
            Chang,Y.S.
  TITLE     A novel role of RASSF9 in maintaining epidermal homeostasis
  JOURNAL   PLoS One 6 (3), e17867 (2011)
   PUBMED   21445300
  REMARK    GeneRIF: in RASSF9-/- keratinocytes there was a drastic
            down-modulation of terminal differentiation markers, which could be
            rescued by infection with a recombinant adenovirus, Adv/HA-RASSF9
            Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC131720.2 and
            AC148992.3.
            
            On May 1, 2007 this sequence version replaced NM_146240.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK041688.1, BC028805.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AC131720.2         10452-10814         c
            364-2118            AC148992.3         76542-78296
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 53.56 cM"
     gene            1..2118
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /note="Ras association (RalGDS/AF-6) domain family
                     (N-terminal) member 9"
                     /db_xref="GeneID:237504"
                     /db_xref="MGI:MGI:2384307"
     exon            1..363
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /inference="alignment:Splign:2.1.0"
     CDS             317..1624
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /note="peptidylglycine alpha-amidating monooxygenase
                     COOH-terminal interactor; P-CIP1; PAM COOH-terminal
                     interactor protein 1"
                     /codon_start=1
                     /product="ras association domain-containing protein 9"
                     /protein_id="NP_666352.1"
                     /db_xref="CCDS:CCDS36048.1"
                     /db_xref="GeneID:237504"
                     /db_xref="MGI:MGI:2384307"
                     /translation="MAPFGRNLLKTRHKNRSPTKDMDPEEKEIVVWVCQDEKIVCGLT
                     KRTTSIDVIQALLEEHEATFGEKRFLLGKASDYCIVEKWRGSERALPPLTRILKLWKA
                     WGDEQPNMQFVLVKTDAFLPVPLWRTAETKLVQNNEKPWELSPANYMKTLPPDKQKRI
                     VRKTFRKLAKIRQDTSSHDRDNMECLVHLIISQDHTIHQQVQRMKELDMEIEKCEAKI
                     HLDRVGNDGANYVHEAYLMPRLSDEEQKLDIQAEINQTLEDLNDSEGMAQLEEQLQYY
                     RALIDKLSAEIEREVKGAGIDGIEDMEGAAACELENSDLESVKCDLETSMKAGLTIHS
                     HLSGIQREIKYSDSLLQMKAREYELLAKEFSSLHISNKDGCQGKENRGKEAEAPSSNG
                     ETPPLTQRVFNIYTNDTDSDTGISSNHSQDSETTLGDVLLLAT"
     exon            364..2118
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1735..1740
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /note="hexamer: AATAAA"
     polyA_site      1755
                     /gene="Rassf9"
                     /gene_synonym="Pamci"
                     /note="major polyA site"
ORIGIN      
        1 tctccctctc tctcctccct ctcctctatc ttttgagctt ccaaacacac accttcttcc
       61 aggctgaagc tgggctggtc tccctaggca cagcagccac aacaatcccg cagttcaaag
      121 ttaggcagca attgcacaac ttccagcaac tctctcagcc agctgctaat gagcttgaaa
      181 gcaaggaaca tctgaggagt tgaaaaggaa gcctccagcc ttcctccttt caccagagag
      241 acccagacac ccctcccagg gcccagatta ctttgagata aggactgtgt tatttgcttg
      301 ccttgccgga cagaccatgg ctccctttgg aagaaactta ctgaagacac gacataaaaa
      361 cagatctcca actaaagaca tggatcctga agagaaggaa attgtggttt gggtttgcca
      421 ggacgagaag attgtctgcg gattaactaa acgcaccacc tccatcgatg ttatccaggc
      481 tctacttgag gaacacgaag ccacatttgg agaaaagcga tttctgttgg gcaaggccag
      541 tgactactgc atcgtagaaa agtggagggg ctcagagcga gcccttcctc ctctgaccag
      601 gatccttaag ctgtggaagg cttggggaga tgaacagccc aacatgcagt ttgttttggt
      661 taaaacggat gccttcctcc cagttccact gtggcggacc gctgaaacca aactagtgca
      721 aaataatgaa aaaccttggg agctcagccc agcgaattac atgaaaacat taccaccaga
      781 taaacaaaaa cgaatcgtca ggaaaacctt ccggaaactg gccaaaatta ggcaggacac
      841 aagttcccat gatcgagaca atatggagtg tttagttcat ttgattattt ctcaggacca
      901 cacgattcac cagcaagtgc agagaatgaa agagttagat atggaaattg aaaaatgtga
      961 agctaagatc cacttggacc gagtagggaa tgatggggct aattacgttc acgaggccta
     1021 tttaatgcct aggttaagtg atgaagagca gaagttagac attcaagctg agatcaacca
     1081 gactctagag gacctgaacg acagtgaggg gatggcgcag ctggaggaac agctgcaata
     1141 ctacagagcc ctcatcgata agctctctgc tgagatcgag agagaggtga agggcgcagg
     1201 cattgatggg attgaagaca tggagggggc agctgcctgt gagctggaaa actcggattt
     1261 ggaaagcgtt aagtgcgatt tggagacaag tatgaaagct ggtttgacaa tccactctca
     1321 cttgagtggc atccagagag agattaaata cagtgactca ctgcttcaga tgaaagcaag
     1381 ggagtacgaa ctcctagcca aggagttcag ctcacttcac attagcaaca aagatggatg
     1441 tcagggaaaa gaaaacagag gaaaggaagc tgaggctccc agcagcaatg gggagacccc
     1501 tccattaact caaagggtgt ttaacatata tacaaatgac acggattcag acactggcat
     1561 cagttcaaac cacagtcagg actctgaaac gactctggga gatgtgctcc tgctggcaac
     1621 ttaacttcaa tggcttcttt ctgaccttta atgatgtttt gggtggttta tcaacgattc
     1681 tattccgtat ataacattgt caaaatgtaa accatgataa agtattcaat agttaataaa
     1741 aactagtggc caccactgct tgttttcaat atagtattac caactttatg ataggttcaa
     1801 gcgaaagtgt attaagaatg cagtaaatct agcttatggt tacataaagc agacacaatc
     1861 taatgaggat tgatgattcc ccccacagct tctatgaggc atgaatgata ggaacgtaaa
     1921 attagttctc aacgtttgtt catcaaaata ttcatactgc aagcatgaag caagatcaac
     1981 atgtttctca gttttgacat tttatcgtta gaatatctaa gtctgtaaag tgcagggatg
     2041 ttcctatgtc atatacatca tatgtggatt aattcaaatc tttgttgttg ttgtttttaa
     2101 taatcagact gcaaaatg
//
