LOCUS       XM_006532593            3271 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus retinoic acid receptor, alpha (Rara),
            transcript variant X3, mRNA.
ACCESSION   XM_006532593
VERSION     XM_006532593.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 9, 2015 this sequence version replaced XM_006532593.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3271
                     /gene="Rara"
                     /gene_synonym="Nr1b1; RAR; RARalpha1"
                     /note="retinoic acid receptor, alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 12 ESTs, 113 long SRA reads, 58 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:19401"
                     /db_xref="MGI:MGI:97856"
     CDS             581..1969
                     /gene="Rara"
                     /gene_synonym="Nr1b1; RAR; RARalpha1"
                     /codon_start=1
                     /product="retinoic acid receptor alpha isoform X1"
                     /protein_id="XP_006532656.1"
                     /db_xref="GeneID:19401"
                     /db_xref="MGI:MGI:97856"
                     /translation="MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSL
                     QHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGV
                     SACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRN
                     DRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRV
                     SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTR
                     YTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICL
                     ICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGA
                     ERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQSGGGTRDGGGLAPPPGSCSPSLSP
                     SSHRSSPATQSP"
ORIGIN      
        1 taaaatgttt gcccagcacg catgaagccc tgtgttctag ccccagcacc agttgacaga
       61 gaagacacag gctgggacag tcaacagagg acacagtggc cttggcaaga actcccccat
      121 cctcaacttg gtctccagcc aaatgctggt tatatatgca tcccccagtc tccaggctta
      181 agcccggagc ttggagcttg gaacctgcac cacaggacat gcctcccccc agccacctac
      241 ctggggccct tctgggagtg gcatcctctt tgataccctg aagaccagct ctggaccttc
      301 ctacaaaagt gtctcccagg accgcttaac caaaggacgg attcttggga catcccccaa
      361 tccacctggc ccctccggct agggaggggg acccagaaga ctaaagttga ctaacttggg
      421 acttgcagct ccagggacag aagggggtgg gggtgggctg accacccaac cccccctctg
      481 ggccccccgg ccccatgccc cgaggaagag ggactgcgtg aaggccatca caactacctg
      541 ccagactgtt tgcctgctct tctgactgtg gctgcttggc atggccagca atagcagttc
      601 ctgcccaaca cctgggggcg ggcacctcaa tgggtaccca gtacccccct acgccttctt
      661 ctttccccct atgctgggtg gactctcccc acccggcgct ctcaccagcc tccagcacca
      721 gcttccagtc agtggttaca gcacaccgtc cccagccacc atcgagaccc agagcagcag
      781 ttccgaagag atagtaccca gccctccctc accaccgccc ctgccccgca tctacaagcc
      841 ttgctttgtt tgtcaagaca aatcatccgg ctaccactat ggggtcagcg cctgtgaggg
      901 ctgtaagggc ttcttccgac gaagcatcca gaagaacatg gtgtatacgt gtcaccggga
      961 caagaactgc atcatcaaca aggtgacccg gaaccgctgc cagtactgcc ggctgcagaa
     1021 atgtttcgac gtgggcatgt ccaaggagtc ggtgcgaaac gatcgaaaca aaaagaagaa
     1081 agaggcaccc aagcccgagt gctcagagag ctacacgctg acgcctgagg tgggcgagct
     1141 cattgagaag gttcgcaaag cgcaccagga gaccttcccg gccctctgcc agctgggcaa
     1201 gtacactacg aacaacagct cagaacaacg agtctccctg gacattgacc tctgggacaa
     1261 gttcagtgaa ctctccacca agtgcatcat taagactgtg gagttcgcca agcagcttcc
     1321 cggcttcacc accctcacca tcgccgacca gatcaccctc ctcaaggctg cctgcctgga
     1381 tatcctgatt ctgcgaatct gcacgcggta cacgcctgag caagacacaa tgaccttctc
     1441 agatggactg accctgaacc ggactcagat gcacaacgct ggctttggcc ccctcaccga
     1501 cttggtcttt gccttcgcca accagctgct gcccctggag atggacgatg ctgagactgg
     1561 actgctcagt gccatctgcc tcatctgtgg agaccgacag gacctggagc agccagacaa
     1621 ggtggacatg ctgcaagagc cgctgctgga agcactgaaa gtctacgtcc ggaaacggag
     1681 gcccagccga ccccacatgt tccccaagat gctgatgaag atcacagacc ttcggagcat
     1741 cagcgccaag ggagctgaac gggtgatcac attgaagatg gagatcccag gctccatgcc
     1801 accgctgatc caggaaatgc tggagaactc tgagggcttg gacactctaa gcggacagtc
     1861 ggggggcgga acacgagatg ggggtggcct ggccccccct ccgggtagct gtagccccag
     1921 cctcagtccc agctcccaca gaagcagccc agccacccaa tccccatgac cacctcgaca
     1981 cacggacagc cctcacccct gccctggctt tctctgcctt cctgctggcc gtgtgacctg
     2041 tcggccccgg gcccgcttgt cctctcagac agaactgggt accttccagg ggggacagga
     2101 aggagaaggc agtgactctg tggacagagg cctggaccca agatggactg ccctcttccg
     2161 gcagcctggg ctggcatcgg gccaggcgtt gagccacatg aggacctggg cctgagccct
     2221 cacccacctt gccacgtctt catcaccagc aaacgccggg acctggctcc ctgtcctcgg
     2281 aactcaagcc atcgctcccc agatggggac ttccccccga cccccgcttt ggatggtgac
     2341 agagggtgcc cagggtgggg gagactccct gtacatatcc tgcgtaccaa tccccagata
     2401 ttaattctcg ttggttttgt ttttatttta atttttttgt ttttgttttt ttgttttttg
     2461 gtttttttta ataagaattt tcattttaag cacatttata ctgaaggaat ttgtgctgtg
     2521 tattggggga gctggatctc gagctgaagg gggtgggtcc cggggacggg cagggctcgg
     2581 aagggatccc ctctcctttg atgtcccagc agatgctccc acatcccagt ctttgctcct
     2641 cagttttctc taatactgtg aaatactaac tttccaaggc caccttccct gtcccgtgca
     2701 ggaaagcagc ttcccctccc ccctctgccc agccactggg tgtgggcatc ttgggcagct
     2761 atccctggga ggagaggatc ctggcttttg gcttgtcccc ctacccacca ataatcaggg
     2821 taagggtgaa gctagggccc ctgggataga ctgttcctcc tcactgcccg tcagagctca
     2881 cttcatccaa gccccagccc cactgtgaag gggccggcta aggggtccaa gttaccccag
     2941 cccccagcct catagccacc agcaccccat ggggcccttc aacacacaca cacacacaca
     3001 cacacacaca cacacacaca cacacacaca cacacacggc ctgagttcct ccaattcccc
     3061 cagcctaccc ccaacccctc ttggccccct ccttgccccg caggacggga ctccaggggg
     3121 tcccctcccc tacacccctg ggctggggga gcaggctcta ccttgccctc ctgcctgggt
     3181 ggggtctcac cctggagccc actggcgcac ctgttcctgc tgggtttcca ctgagatcta
     3241 ctggagaaag aataaagttc tatttattct a
//
