LOCUS       XM_006496327            2794 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus Ras association (RalGDS/AF-6) and
            pleckstrin homology domains 1 (Raph1), transcript variant X7, mRNA.
ACCESSION   XM_006496327
VERSION     XM_006496327.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006496327.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..2794
                     /gene="Raph1"
                     /gene_synonym="9430025M21Rik; C730009O10Rik; Lpd"
                     /note="Ras association (RalGDS/AF-6) and pleckstrin
                     homology domains 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 10 ESTs, 140 long
                     SRA reads, 3 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:77300"
                     /db_xref="MGI:MGI:1924550"
     CDS             511..2520
                     /gene="Raph1"
                     /gene_synonym="9430025M21Rik; C730009O10Rik; Lpd"
                     /codon_start=1
                     /product="ras-associated and pleckstrin homology
                     domains-containing protein 1 isoform X6"
                     /protein_id="XP_006496390.1"
                     /db_xref="GeneID:77300"
                     /db_xref="MGI:MGI:1924550"
                     /translation="MEQLSDEEIDHGAEEDSDKEDQDLDKMFGAWLGELDRLTQSLDS
                     DKPKEPVKRSPLRQETNMANFSYRFSIYNLNEALNQGETVDLDALMADLCSIEQELSS
                     IGSGNSKRQVTEPKVPQKLPAGRHTSKHGTLRGPSSSSNRTTKPSHANYSLDDITAQL
                     EQASLSMDEAAQQSLVEDPKPLVTNQHRRTASAGTVSDAEARSISNSSRSSITSAASS
                     MDSLDIDKVTRPQELDLTTHQGQPITEHAISLSCPSKQAKHHSDFTEEQAELTPHSYL
                     DRETSLLLRNIAGKPSHLLTKEEQAAKLKAEKIRVALEKIKEAQVKKLVIRVHMSDDS
                     SKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETISELQMERIFEDHENLVENLLN
                     WTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVP
                     EIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQD
                     YRNKYKAPTDCCLALKHPQIQKKSQYIKYLCCDDARTLHQWVNGIRIAKYGKQLYTNY
                     QEALKRTESAYDWTSLSSSSIKSGSSSSSIPESQSNHSNQSDSGVSDTLPTGHIRSQS
                     TVSSIFSEAWKRGTQLEESSKSQVPHEKANSAKVCIPEAAKTGSS"
ORIGIN      
        1 acacggacgc gcgctggaaa ggcagggcgc ggaggacggc cgcggctggg tgcggcccgg
       61 cgcctgaggg gcggccggtt gggtgggggt ggggggtgcg gctgtccagg ccgggagggg
      121 cgcgcgcgtg cgcgcgtgcc ggggagcagg agaggcgcgc ggccgcctgc gccggaagtg
      181 agcggtggcc gcggcgggga gcgcgcggtc aggcgcaagt cggtccgccc ttgggccgcg
      241 cggccctcag ccccgcccag tgtgccgggg caggacgcgc gggctctgtg atccgcgccg
      301 cggggctctg cggccgcccc gcccagtccc cgccgacgcc cgctctgtgg gtcggtcagt
      361 cagtcgccga gcgcgcgccg cgggagctgc gggcgctctc agcgttcggg agaggagcgt
      421 cgcccctgga gaggcggcgg cggcggcgac tggaggcgcg agcagctgct gcctagcgca
      481 gggctccggg agggccgagg ggctgccacg atggagcaac tatccgatga agagattgac
      541 catggtgctg aagaagacag cgacaaggaa gatcaggacc tggataaaat gtttggggcc
      601 tggcttggag aactggacag gcttactcag agtttggatt ctgacaagcc caaagaacca
      661 gtaaaaagat ctcctcttcg ccaggaaaca aatatggcca acttttctta ccgcttctcc
      721 atatacaact tgaatgaagc tctgaatcag ggtgagactg tggacctgga tgccctgatg
      781 gctgacctct gctctataga gcaggagctc agcagcattg gctcaggaaa tagtaagcgt
      841 caagtcacag aaccaaaagt tcctcagaag ctacctgctg gccgacatac gtcaaaacat
      901 ggcaccctga gaggaccgtc atcttcctct aatagaacaa ctaaaccttc ccatgctaac
      961 tactccctgg atgacatcac tgctcagtta gaacaggctt ccttgagcat ggatgaggct
     1021 gctcagcaat ctctggtaga agatcctaag cctttagtga caaatcagca cagaaggact
     1081 gcatcagcag gcactgtgag tgatgctgaa gcgcgctcca tcagtaactc ctcccggtca
     1141 agcatcacct ctgcagcctc cagcatggat tctctggata ttgataaagt gacacgccct
     1201 caagagcttg atttgaccac acaccagggg cagccaatta ctgagcatgc tatctctctg
     1261 agctgtccca gtaagcaggc caagcaccac tctgacttca cagaagagca ggctgagctg
     1321 acacctcact cctatctgga cagggaaacc tcccttcttc tgagaaacat tgcaggaaaa
     1381 ccttcccatt tgctgaccaa ggaagaacag gcagcaaaac tgaaagctga gaagatccga
     1441 gttgctctgg agaaaattaa agaggctcaa gtgaaaaagc tggtaatcag ggtccacatg
     1501 tctgatgaca gttctaagac aatgatggtg gatgagagac agacagtgag acaagtgctg
     1561 gataacctga tggacaaatc tcactgtggc tacagtttag actggtcgct ggtggaaacc
     1621 atttccgagt tacaaatgga aagaatcttt gaagaccatg aaaacttggt tgaaaatctt
     1681 cttaattgga caagagacag ccaaaataag cttatattta tggagcgtat agaaaaatat
     1741 gcacttttta aaaaccccca gaattatctt ctagggaaaa aggaaacagc tgaaatggca
     1801 gacagaaaca aagaagtgct gttagaggaa tgtttttgtg gaagttctgt aactgtccca
     1861 gaaattgaag gagtcctttg gttaaaagat gatggcaaga agtcctggaa aaagcgttat
     1921 tttctcttgc gagcatctgg tatctactat gtccccaaag gaaaagcaaa ggtatctcgg
     1981 gatctagtgt gctttctcca gctggatcat gtaaatgtat actatggaca ggactatcgg
     2041 aacaaataca aagcacccac agactgctgc ctggcattaa agcacccaca gatccagaag
     2101 aagtctcagt atatcaagta cctttgctgt gatgatgcaa ggaccctgca tcagtgggtc
     2161 aatggaatcc gcattgccaa gtatgggaag cagctctaca cgaattacca agaagccttg
     2221 aagaggacag agtccgctta tgattggact tcgttatcca gctccagcat taaatccgga
     2281 tccagttctt ccagtatccc ggagtctcag tcaaaccact ctaatcagtc tgacagcgga
     2341 gtgtctgaca ccctgccaac tggacatatc cgttcccaaa gtaccgtgag ctccatcttc
     2401 tcggaagcct ggaagcgagg cactcagctg gaagagtcca gcaagtctca ggtgccacat
     2461 gagaaggcca actcagctaa ggtctgcatc cctgaagcag ccaagacagg gtcaagttaa
     2521 ggccagaatg gagtctatga atcggtccta cacttcactt atgccccctc tgtcccctca
     2581 aactaagatc atcaccccct atactgcctc acaaccttca ccgcctcttc ctcctcctcc
     2641 gccaccacct cctcctcctc cacctccgcc accaccacct cctcctcctc ttcccagcca
     2701 gtctgcacca tcttcaggct cagcagctac catgtttgtc aagtacagca caatcaccag
     2761 gctgcaaaat gcagctcagc attcagggac cctg
//
