LOCUS       NM_011239                852 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RAN binding protein 1 (Ranbp1), mRNA.
ACCESSION   NM_011239
VERSION     NM_011239.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Paronett,E.M., Bryan,C.A., Maynard,M.E., Goroff,J.A., Meechan,D.W.,
            LaMantia,A.S. and Maynard,T.M.
  TITLE     Ranbp1 modulates morphogenesis of the craniofacial midline in mouse
            models of 22q11.2 deletion syndrome
  JOURNAL   Hum Mol Genet 32 (12), 1959-1974 (2023)
   PUBMED   36790128
  REMARK    GeneRIF: Ranbp1 modulates morphogenesis of the craniofacial midline
            in mouse models of 22q11.2 deletion syndrome.
REFERENCE   3  (bases 1 to 852)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 852)
  AUTHORS   Paronett,E.M., Meechan,D.W., Karpinski,B.A., LaMantia,A.S. and
            Maynard,T.M.
  TITLE     Ranbp1, Deleted in DiGeorge/22q11.2 Deletion Syndrome, is a
            Microcephaly Gene That Selectively Disrupts Layer 2/3 Cortical
            Projection Neuron Generation
  JOURNAL   Cereb Cortex 25 (10), 3977-3993 (2015)
   PUBMED   25452572
  REMARK    GeneRIF: Ranbp1 emerges as a microcephaly gene within the 22q11.2
            deleted region that may contribute to altered cortical precursor
            proliferation and neurogenesis associated with broader 22q11.2
            deletion.
REFERENCE   5  (bases 1 to 852)
  AUTHORS   Karpinski,B.A., Maynard,T.M., Fralish,M.S., Nuwayhid,S., Zohn,I.E.,
            Moody,S.A. and LaMantia,A.S.
  TITLE     Dysphagia and disrupted cranial nerve development in a mouse model
            of DiGeorge (22q11) deletion syndrome
  JOURNAL   Dis Model Mech 7 (2), 245-257 (2014)
   PUBMED   24357327
REFERENCE   6  (bases 1 to 852)
  AUTHORS   Bischoff,F.R., Krebber,H., Smirnova,E., Dong,W. and Ponstingl,H.
  TITLE     Co-activation of RanGTPase and inhibition of GTP dissociation by
            Ran-GTP binding protein RanBP1
  JOURNAL   EMBO J 14 (4), 705-715 (1995)
   PUBMED   7882974
REFERENCE   7  (bases 1 to 852)
  AUTHORS   Tyndall,C., Watt,F., Molloy,P.L., Vincent,P.C. and Frommer,M.
  TITLE     Binding of proteins from embryonic and differentiated cells to a
            bidirectional promoter contained within a CpG island
  JOURNAL   J Mol Biol 226 (2), 289-299 (1992)
   PUBMED   1640448
REFERENCE   8  (bases 1 to 852)
  AUTHORS   Bressan,A., Somma,M.P., Lewis,J., Santolamazza,C., Copeland,N.G.,
            Gilbert,D.J., Jenkins,N.A. and Lavia,P.
  TITLE     Characterization of the opposite-strand genes from the mouse
            bidirectionally transcribed HTF9 locus
  JOURNAL   Gene 103 (2), 201-209 (1991)
   PUBMED   1889746
REFERENCE   9  (bases 1 to 852)
  AUTHORS   Lavia,P., Macleod,D. and Bird,A.
  TITLE     Coincident start sites for divergent transcripts at a randomly
            selected CpG-rich island of mouse
  JOURNAL   EMBO J 6 (9), 2773-2779 (1987)
   PUBMED   2445562
REFERENCE   10 (bases 1 to 852)
  AUTHORS   Bird,A., Taggart,M., Frommer,M., Miller,O.J. and Macleod,D.
  TITLE     A fraction of the mouse genome that is derived from islands of
            nonmethylated, CpG-rich DNA
  JOURNAL   Cell 40 (1), 91-99 (1985)
   PUBMED   2981636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK166642.1.
            
            On Jul 25, 2007 this sequence version replaced NM_011239.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK166642.1, BC061140.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164140, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-852               AK166642.1         3-854
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 11.3 cM"
     gene            1..852
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /note="RAN binding protein 1"
                     /db_xref="GeneID:19385"
                     /db_xref="MGI:MGI:96269"
     exon            1..147
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
     exon            148..284
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
     exon            285..442
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
     exon            443..571
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
     exon            572..637
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
     exon            638..852
                     /gene="Ranbp1"
                     /gene_synonym="Htf9a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggggcgga gggaagagcg gacgggcggg agcgccggcg ccagacgcgg aggaaaggag
       61 ctgcgactag ccgcccagag gccgccgagc cagcgacgcc tgagctagtc gagccaccgt
      121 cgccgcgccc ccatggcggc cgccaaggac agtcacgagg accatgatac ttccacagag
      181 aatgcagatg agtccaacca cgacccccag ttcgagccaa tagtttctct tcccgagcaa
      241 gaaattaaaa cgctggagga agatgaagag gaacttttta agatgcgtgc aaagctgttc
      301 cggtttgctt cagagaatga cctcccagaa tggaaggagc gaggcactgg agatgtcaag
      361 cttctgaagc acaaggagaa agggaccatc cgccttctta tgaggaggga caaaaccttg
      421 aagatatgcg ccaaccacta tattacacca atgatggagc tgaagccgaa tgctggcagt
      481 gaccgagcct gggtctggaa tacccacgcc gactttgctg acgagtgccc caagcctgag
      541 ctgctcgcca tccgcttcct aaatgctgag aatgcacaaa agttcaaaac aaagtttgaa
      601 gaatgcagga aagaaattga agagagagaa aagaaaggac caggcaaaaa tgataatgcc
      661 gaaaaggtgg ccgagaagct ggaagccctt tcagtgaggg aggccagaga ggaggctgaa
      721 gagaagtctg aggagaaaca atgaatcact ctgtcttttt cctttccttt tctttttaaa
      781 aatttgccct accctttaag gtttgttttt ctgttttgtt tttacaaggg actttataaa
      841 gaactgaatt cc
//
