LOCUS       NM_001357033            3275 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RALY RNA binding protein-like (Ralyl), transcript
            variant 5, mRNA.
ACCESSION   NM_001357033 XM_017319801
VERSION     NM_001357033.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Wang,X., Wang,J., Tsui,Y.M., Shi,C., Wang,Y., Zhang,X., Yan,Q.,
            Chen,M., Jiang,C., Yuan,Y.F., Wong,C.M., Liu,M., Feng,Z.Y.,
            Chen,H., Ng,I.O.L., Jiang,L. and Guan,X.Y.
  TITLE     RALYL increases hepatocellular carcinoma stemness by sustaining the
            mRNA stability of TGF-beta2
  JOURNAL   Nat Commun 12 (1), 1518 (2021)
   PUBMED   33750796
  REMARK    GeneRIF: RALYL increases hepatocellular carcinoma stemness by
            sustaining the mRNA stability of TGF-beta2.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3275)
  AUTHORS   Delprato,A., Bonheur,B., Algeo,M.P., Rosay,P., Lu,L., Williams,R.W.
            and Crusio,W.E.
  TITLE     Systems genetic analysis of hippocampal neuroanatomy and spatial
            learning in mice
  JOURNAL   Genes Brain Behav 14 (8), 591-606 (2015)
   PUBMED   26449520
REFERENCE   4  (bases 1 to 3275)
  AUTHORS   Cui,Z.W., Xia,Y., Ye,Y.W., Jiang,Z.M., Wang,Y.D., Wu,J.T., Sun,L.,
            Zhao,J., Fa,P.P., Sun,X.J., Gui,Y.T. and Cai,Z.M.
  TITLE     RALY RNA binding protein-like reduced expression is associated with
            poor prognosis in clear cell renal cell carcinoma
  JOURNAL   Asian Pac J Cancer Prev 13 (7), 3403-3408 (2012)
   PUBMED   22994768
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161601.4, AK079659.1 and AC121588.2.
            
            On Oct 17, 2017 this sequence version replaced XM_017319801.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660819.65140.1,
                                           SRR7345562.3927574.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-369               AC161601.4         113974-114342
            370-2960            AK079659.1         343-2933
            2961-3275           AC121588.2         28877-29191         c
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 3.01 cM"
     gene            1..3275
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /note="RALY RNA binding protein-like"
                     /db_xref="GeneID:76897"
                     /db_xref="MGI:MGI:1924147"
     exon            1..1138
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1417
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1162..2043
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /note="isoform a is encoded by transcript variant 5;
                     RNA-binding Raly-like protein"
                     /codon_start=1
                     /product="RNA-binding Raly-like protein isoform a"
                     /protein_id="NP_001343962.1"
                     /db_xref="CCDS:CCDS84609.1"
                     /db_xref="GeneID:76897"
                     /db_xref="MGI:MGI:1924147"
                     /translation="MTGKTQTSNITNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSK
                     YGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGS
                     KRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPR
                     VAVTTTRRGKGVFSMKGGSRSTVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGR
                     LEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGQEADGGEMTDGV
                     EEDFDEDGGHELFLQIK"
     exon            1418..1493
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1526
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1574
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1738
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1852
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1853..2025
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2026..3275
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2942..2947
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2968
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /note="major polyA site"
     regulatory      3060..3065
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3086
                     /gene="Ralyl"
                     /gene_synonym="0710005M24Rik"
ORIGIN      
        1 gcgtgcgctc agcccagcgt gagcggcacc tgctagtccg ggctcgccga ggaggccgcc
       61 tcgccgggct ctcaccgccg cgcccgcccg agcggctcag agggcttcga gggctccgag
      121 gtcgcccagc agccgcggtg gccccgctgc ctgcaagtcc gcctggctcc gagtcacgtg
      181 tcagtgcccg aggcagagac tgagaaaaaa acgcgcttca ttccttcttc caccgccata
      241 ctgtattttc ctaaatctca tttttattcc aacattttac tcccgctcgg tgagtaccta
      301 ctcagtggca ttcttgtcct attctttttt ttttcctttt ttttgttttt gtttttgttt
      361 tttttttttc ttcttcttct tcttcttttt cttcccactt ctttgattat tgtttgtatt
      421 tgggaaagct gacgagcata gtcttaagcc ttttcctcaa tcaagttttc ctagcatgcg
      481 atggttctct agacaaggcg ctgtgtctgg gagtccgcgg cagcggtgct ctctgcgagc
      541 ggctcccaag tccagcaaaa tgtgcaactg gttttatgga aaaagcgttg tgaagtatgg
      601 tgcctatttt tttccctttg taaagataag aaagcatgtt tctaactctt ttttacgtac
      661 tctttttccg attgcatttt tgtgtaggtg ggattttcca gcagtgttca caagtttgtc
      721 gtcttgcaat tcgattcgca ccactgagca aagacattaa ttttgcattt ttatgacctt
      781 tttggaagcc tgtgagaaat atttcgtttt ttcccctcct gtttttgata tcagttgata
      841 acatgaaact tttcttgcag ctagttaaag ggattatttt taagcagttg ctttttttcc
      901 tcctttacat taactattac ttttgcatat ttgacttttt tatttaaaaa acccgagata
      961 attttatgat agatatcctg atatctatat tatcccttct tcctccttct cccctccccg
     1021 taaatcaatt ttcaaatgat ggcagtggaa ggtttttctg gaaaaaaaaa tgaagtgcgg
     1081 tttggtttcc ttgtcaacgg aggatgaagt gaacagcaca acagctcgca gagagcagga
     1141 ttgaaacaag gtgaaccaac catgacgggc aaaacacaaa caagcaacat taccaataag
     1201 aatgacccca agtccatcaa ctccagggtt ttcatcggca atttgaatac agccatcgtc
     1261 aaaaaggtcg acattgaagc tattttttca aagtatggaa aaatcgttgg ctgctctgtt
     1321 cacaaagggt atgctttcgt tcagtacatg agtgagcgtc atgcaagagc cgcagtggct
     1381 ggagaaaacg ccagggtcat cgcaggccag cctcttgata tcaacatggc aggggaaccc
     1441 aaaccctaca gaccaaagcc tggaagtaag agacccctgt cagccctgta caggcttgaa
     1501 tcaaaggagc cattcctgtc tgttggtggt tacgtatttg actacgatta ctacagagat
     1561 gatttctaca atcggctgtt tgattaccat ggccgtgtac ctccgcctcc tcgagctgtc
     1621 atcccactca aacgtcccag agtggctgtc accaccacac gcaggggcaa aggcgtcttt
     1681 tccatgaaag ggggatccag atctactgtt ggtgggtcat cttcatcagg ctctaagttg
     1741 aaatcagatg agttacagac aatcaagaaa gaattaactc agatcaaaac caaaattgac
     1801 tccttgctgg ggcgcctgga gaagattgag aagcagcaaa aggcagaagc agaagctcag
     1861 aagaagcaat tggaggagag tatagagctg atccaagacg aatgtgtgtc agagaatgca
     1921 gaccactcca cagaggagcc tgctgaagga gggcaagaag ctgatggagg agagatgact
     1981 gatggggtag aggaggactt cgatgaagat gggggtcacg agctgtttct acagataaag
     2041 tgatatgaag tagtgtacaa tagtccaaaa gaagaaagga gaaactgtgc cacgtggaaa
     2101 aatgagaaag atggtttcac aatggacagc aacatctcca attcagttga tgtaaaagct
     2161 ccaatcatac ggacagtgtt gttcactttt agaaatacca tttcttctgt gttccaagca
     2221 gtacaattgt tgttttatgg tttacattgt aaatgtgttt tccttcttgc ttattttttt
     2281 taagtcttaa attgtgaagg atgttaatga gtggtgagag agacactgta tacaaatgta
     2341 tatttgtaaa agctattttt atgattagca tgtgtcattg ttgatcacat tgtcatgtag
     2401 tgttgcaatc ctacacttaa agcttgtttc caacaatgtc atagggaaaa tatacattgt
     2461 atgctagttt ttataattta atttcaactt atagtttaag gtatcttaga ccatgaggaa
     2521 attatatgaa aagctatatt tctgccctct ataagcacca tttttattaa taaagaatgc
     2581 agttatttca gaagtgatgc aagaaatgaa ggactttggt ttgacctgtg agcatgcttg
     2641 acgctaatga gctgaaatga atgatccagt caccacctat ttcctgagga gtctgactgt
     2701 gctcttgtgg acagcttcca ggactcatgg acgagaagta aactgataag gaaaagattg
     2761 tcttgtcctt ggatccaaaa gtttcagtta gtgcacaccc tctccatctt ctctcctact
     2821 cctcagaatc ctccattccc aagcattgta tattccaaat actcttggct attgtcttgt
     2881 gcagtggaaa tgggagagac catccccaca ggctataggc acactcagca cataatttct
     2941 taataaatac tggttctttt aaaacaaagt tggtgtgtgg tttttctttg tgttctgctt
     3001 attttaatat tcagtgtgaa cattttgcat ctccatgatg ggttaaaaat aagcccaata
     3061 ataaaagctg tctaactaca ctgaaatatg ctctggatgc gttctctata ctcctcatgg
     3121 catgcctgtg tttgaacata cattaactta ctgtacaaaa gaaaatcaga tggctctgca
     3181 ttcttgacag aagtcaccat ccaaatcaca ttcagagaat gtgtattgct cttctgaata
     3241 ttaaatgata ataaaatatt tctagatata aatgt
//
