LOCUS       XM_006499015            5224 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus hnRNP-associated with lethal yellow (Raly),
            transcript variant X4, mRNA.
ACCESSION   XM_006499015
VERSION     XM_006499015.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 6, 2023 this sequence was replaced by
            NM_001420807.1.
            
            On Sep 21, 2020 this sequence version replaced XM_006499015.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..5224
                     /gene="Raly"
                     /gene_synonym="Merc"
                     /note="hnRNP-associated with lethal yellow; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 8 ESTs, 2192 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 47 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:19383"
                     /db_xref="MGI:MGI:97850"
     CDS             165..1103
                     /gene="Raly"
                     /gene_synonym="Merc"
                     /codon_start=1
                     /product="RNA-binding protein Raly isoform X1"
                     /protein_id="XP_006499078.1"
                     /db_xref="GeneID:19383"
                     /db_xref="MGI:MGI:97850"
                     /translation="MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSK
                     YGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLK
                     RAATAIYSGYSFDYDYYQDYFCARLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKT
                     TIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKAN
                     PDGKKKGDSSSGGGGGSSGGGGSSNVGGGSSGGSGSCSSSSRLPAPQEDTASEAGTPQ
                     GEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ"
ORIGIN      
        1 cctctgcgcg ccgaagctct ggacctttcc aaagcccggc gcgaggggtg tgcagggagc
       61 ccacgcgttt ggagagcccg gcccgtgcag ggcggcgctg gggactgagt gctcgggtgg
      121 caggatccta ttcggaggac cgagaggaga accgggtgaa caccatgtcc ttgaagattc
      181 agaccagcaa tgtaaccaac aagaatgacc ctaagtccat caactctcgg gtcttcatcg
      241 gaaatctaaa cacagctgtg gtgaagaagt cagatgtgga gaccatcttt tccaagtacg
      301 gccgagtggc tggttgctct gtgcacaaag gctatgcttt tgtccagtat gccaatgagc
      361 gccatgcccg ggcagctgtg ctgggagaga atgggcgggt gctggctgga cagaccctgg
      421 acatcaacat ggctggagag cccaagccta atagacccaa ggggctaaag agagcagcaa
      481 ctgccatcta cagtggctac agctttgact atgattacta ccaagactac ttctgtgcca
      541 ggctgtttga ttatcgaggc cgcctttctc cagtgcctgt gcccagggca gttccggtga
      601 agcgaccccg tgttacagtc cctttggttc gccgtgtcaa aactacgata cctgtcaagc
      661 tctttgcccg ctccacagct gtcactactg gctcagccaa aatcaagtta aagagcagtg
      721 agctacagac catcaaaaca gagctgacac agatcaagtc caacatcgat gccctgttgg
      781 gtcgcttgga acagattgct gaggaacaga aggccaaccc agatggcaag aagaagggtg
      841 acagcagcag tggtggagga ggaggcagca gtggtggagg cggcagtagc aatgttggtg
      901 gtggcagcag cggcggcagc gggagctgca gcagcagcag ccggctacca gcgccccaag
      961 aagacacggc ttctgaggca ggcacacccc aaggagaagt ccaaactcga gatgatggtg
     1021 atgaggaggg actgctaaca catagcgagg aggagctgga gcacagccag gacacagatg
     1081 cagaagatgg agccttgcag taagcagctt aacaggagca ttggccacca gcagaagggc
     1141 atcactgtct caggcctcaa gccaggcacc catctctgga tgccagtcta tagcgggtac
     1201 cagaggaaag ctggcagcag taactctctc cccatgcatc ctagccagtg agtgctacat
     1261 cctttgcaag tggagttact ggcctaccct taccccatgc attcttcctg tctgcactgc
     1321 ctgggccaag gggcagaaac actctgctct tcttccccag gacattccca ggcttggggt
     1381 ttttctatag gtttgaaagt aaagggggga gggtgggaag ggtgggagga acctgacaat
     1441 aaagagattg gatccaaata tgctctgagg tggaatggtt tgcttgttta ttttgtttac
     1501 atgtgtgtac atggtattag gtggtagaca tgtgtgtgcc acactatctg tagaggtcaa
     1561 aggacagctc tgtggagaca gtttgctctt ttcaccttta gatgggcttt ggagattgtc
     1621 aggcttgcac aggaaacact ttacccactg agtcttctca ctgtctgtat ttctatgata
     1681 aaacactatg accaaaagca acttgggaag aacaggataa ctttatcttc tacttccagg
     1741 aagcagtcta ttactaagga aagtcagggt aggaacctgg aggcaagaac tgatgatgaa
     1801 ggccatggag gagtgctgct taaaggtttg ctccatggct tgctcagcct gctttcttat
     1861 agttgcccac attgggatgg atcctcccac atcaatcatc agtcaggaaa atgcagcaca
     1921 ggccaatctg gtacaggtat cctggctcct gcccaccaga aagctgctat attgaacact
     1981 tttattctcc actaacttct cttctccagg gaacactttc ttgtccaata ctgaaccatt
     2041 agcaccagta ttcctttgct aaaatgagta aagttaagct tgatggctat aatcccagca
     2101 ctgagagaga gagaagcaga agggtcagtt agttcataac tggtcaggac tacatgagac
     2161 cttgtttcaa caacaaccta taaatgtacc tgtcattttt agatctttaa tgcaactcta
     2221 gaatctaaat tgcttgcagc aagaaatagc tttatttatt ccaaaatggt aatgtaacag
     2281 ggtttttttg tttgtttgtt ttgttttgtt tttttaagct gctcaagtag catggaactg
     2341 taatcccaga actggttagg tagaggcagg agaacccaaa gttcaaggtc atcttggtta
     2401 tataacaagt ttgaggctag cctacattat aagagactct gtttcaataa acacagacaa
     2461 acagtaaata aggttaaaat aaggtaactg tgcaggtgct gagctggcgc caagcagtca
     2521 taggccatct gtcacccagc agttggccac agcctcatct ttgtacagct tcttagtctg
     2581 gttttggctc aaaggattca agaattctcc actttctctg ttgccttaga atgatgaact
     2641 ttgtattaga atttgtcctc tcttcagctt cttggagctg ttttatgtca cttcctaaca
     2701 aggtaggctt gtcttttgtt gttgctagct atcctaatag gctttatttt tcattctgtc
     2761 tagaccccct tttctataaa atacaaatat ccctatagag tcgaaaaggc ttttcccctt
     2821 ttggtaaatg tgggccattt gttctactct atcactgcaa ttttgggcat gctggcaatt
     2881 aacacatctt aagtttacag tcccgttacg atcatgtgtc tgtcgcatga gctaaagaaa
     2941 gacaaggttc tgtagatgac tgtagacatt taacttgaga gggtacagtg cagaaggctg
     3001 gctaccagga gaacgtatac caagaatttg gaatatgttc cttatccagg gtccccatag
     3061 accagaccat ctgaattaag cagaccaaaa agccacaaat agcccagaaa gtgttaacta
     3121 acttgcattc tccttattca gttagataga tgtgccatcc aggatcccag gaatgtggat
     3181 taggttgagg gtgtaggaca gcatccacct agcaagtaca aaaactcaag gtctgatcat
     3241 ctacacccaa cctgggaggc agtgttaaat tagagaccag cagtaatact attttgaaca
     3301 agtgagttac caatgttaaa gtttcataca ggttttgatg acagatgaga catcaaacac
     3361 tccagaccaa ggcaaacatc agaatttacc tgagatattt taagatcata gcccctctgg
     3421 gcattaagag cttttattca ctgttatagc caaaagccct ttaagccagg aattctatga
     3481 atatccttca tggaaacccc agagttgttt tttcgagaca gggtttctct gtatagccct
     3541 ggctgtcctg gaactcactt tgtagaccag gctggtctcg aactcagaaa tcctcctgcc
     3601 tctgcctcct gagtgctggg attaaaggcg tgcgccacca cacctggctt gttatttcta
     3661 attttaaact attaagaaag gaacagattt ttactaagca tttatacaat tttgttatag
     3721 ttccatgaaa ataagaacac atacatattt ccaaaaacct taaaaatttt ctttaaatat
     3781 gaacaacttg caaaatgtaa tattttagct gcaaaaccca gtaagattta aattttatgt
     3841 gtatgagtgt tttgcttgca ttaatatcta caacacttct gctcctagtg cctgcagagg
     3901 gtgccggatc ccctgaaagt ggaggagcta cagatggttt tgagctacta cgtgggtgct
     3961 gggaaccaat cctgggttct ctagaatagc taagtcatta ttccatcccc atttctgaag
     4021 caatttgtaa ctagacaacc ttgagagtat ccaaatactc ttagtttgtt ccattgacta
     4081 tttgagacaa tttaagtctt tgggggtggg ggctttaaaa ggtgatttgt ctatggggtt
     4141 caagagatct ctgcttatct tgaacatttg cctagttgtc tcactagctt caagcttggg
     4201 agattgtaca cagatcttat gttaccaatt ttatctatta tttcccattt gaacaaatca
     4261 aacttaaatt ctcaggactg ccataggtct ttttcagcca ttcatggctg acaagtatgt
     4321 taaatgagtc cagttacatg agtggcaaca gaaatagtct catcagcatg ggactgtagg
     4381 acagtacttc cattttgctg accttgtttg ttactgtttt gggaaatggc ctcttggttt
     4441 agctgttgtc ctggtcattt cagtacatgt ttctgcacta gttgtctgct ctttaggaac
     4501 tgaatctata cagcagaact tcttctgcct agtttttgac tacaaggtat gatagaaaat
     4561 ttgattctgg gtgtgggaca gtattcaggc ctgagttttc agatttgtca aggcctgtct
     4621 cagcctcctg agtgctgaga ttacagacat gtgcctccac acatgcctca cttttgttta
     4681 tactcagctt ttgcactgag ttctatagaa tgtgtgtact gagaaagggt aggatagaga
     4741 tttcatggct attctgctaa attcttcaca ggcactgctt atttgcttat cagagatgca
     4801 catcctgtta atatatactg ggaactgaca attgcctaag atcatgtcac ttgagagtca
     4861 taatgtaaat ctacttgaag cctacatgac tgaaaatcct gatttttttt ttttagtctc
     4921 ttgggccttc ctctgcattc ccagtgttct ttgcttaact ccctttaatg cctgtctctc
     4981 tacattcgtc tccactccta attttttcca tggtaatatg agctaccatt aatcccgcct
     5041 taggtttcag gcatgttcca ctcacattcc aacaaaaggg tagctgtgaa ccccatgtaa
     5101 ctgagttgca tgaaatatag aatgtcatgt tttaaaataa acttataatt ctgttgtacc
     5161 atatttacat tctttgggta tgcctaggca ctctttcaca ttagattaaa aaggttttca
     5221 tgtt
//
