LOCUS       XM_006499014            5310 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus hnRNP-associated with lethal yellow (Raly),
            transcript variant X3, mRNA.
ACCESSION   XM_006499014
VERSION     XM_006499014.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 6, 2023 this sequence was replaced by
            NM_001420806.1.
            
            On Sep 21, 2020 this sequence version replaced XM_006499014.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..5310
                     /gene="Raly"
                     /gene_synonym="Merc"
                     /note="hnRNP-associated with lethal yellow; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 9 ESTs, 2230 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:19383"
                     /db_xref="MGI:MGI:97850"
     CDS             251..1189
                     /gene="Raly"
                     /gene_synonym="Merc"
                     /codon_start=1
                     /product="RNA-binding protein Raly isoform X1"
                     /protein_id="XP_006499077.1"
                     /db_xref="GeneID:19383"
                     /db_xref="MGI:MGI:97850"
                     /translation="MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSK
                     YGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLK
                     RAATAIYSGYSFDYDYYQDYFCARLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKT
                     TIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKAN
                     PDGKKKGDSSSGGGGGSSGGGGSSNVGGGSSGGSGSCSSSSRLPAPQEDTASEAGTPQ
                     GEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ"
ORIGIN      
        1 cctcctctgc gcgccgaagc tctggacctt tccaaagccc ggcgcgaggg gtgtgcaggg
       61 agcccacgcg tttggagagc ccggcccgtg cagggcggcg ctggggactg agtgctcggg
      121 tggcaggatc ctattcggag gaccgagagg agaaccgggt gagccctatt tctagagaca
      181 gctgctgctg accctgtaac tcaaaggaca aactagctgg ctaaactcat tcttggtact
      241 ggtgaacacc atgtccttga agattcagac cagcaatgta accaacaaga atgaccctaa
      301 gtccatcaac tctcgggtct tcatcggaaa tctaaacaca gctgtggtga agaagtcaga
      361 tgtggagacc atcttttcca agtacggccg agtggctggt tgctctgtgc acaaaggcta
      421 tgcttttgtc cagtatgcca atgagcgcca tgcccgggca gctgtgctgg gagagaatgg
      481 gcgggtgctg gctggacaga ccctggacat caacatggct ggagagccca agcctaatag
      541 acccaagggg ctaaagagag cagcaactgc catctacagt ggctacagct ttgactatga
      601 ttactaccaa gactacttct gtgccaggct gtttgattat cgaggccgcc tttctccagt
      661 gcctgtgccc agggcagttc cggtgaagcg accccgtgtt acagtccctt tggttcgccg
      721 tgtcaaaact acgatacctg tcaagctctt tgcccgctcc acagctgtca ctactggctc
      781 agccaaaatc aagttaaaga gcagtgagct acagaccatc aaaacagagc tgacacagat
      841 caagtccaac atcgatgccc tgttgggtcg cttggaacag attgctgagg aacagaaggc
      901 caacccagat ggcaagaaga agggtgacag cagcagtggt ggaggaggag gcagcagtgg
      961 tggaggcggc agtagcaatg ttggtggtgg cagcagcggc ggcagcggga gctgcagcag
     1021 cagcagccgg ctaccagcgc cccaagaaga cacggcttct gaggcaggca caccccaagg
     1081 agaagtccaa actcgagatg atggtgatga ggagggactg ctaacacata gcgaggagga
     1141 gctggagcac agccaggaca cagatgcaga agatggagcc ttgcagtaag cagcttaaca
     1201 ggagcattgg ccaccagcag aagggcatca ctgtctcagg cctcaagcca ggcacccatc
     1261 tctggatgcc agtctatagc gggtaccaga ggaaagctgg cagcagtaac tctctcccca
     1321 tgcatcctag ccagtgagtg ctacatcctt tgcaagtgga gttactggcc tacccttacc
     1381 ccatgcattc ttcctgtctg cactgcctgg gccaaggggc agaaacactc tgctcttctt
     1441 ccccaggaca ttcccaggct tggggttttt ctataggttt gaaagtaaag gggggagggt
     1501 gggaagggtg ggaggaacct gacaataaag agattggatc caaatatgct ctgaggtgga
     1561 atggtttgct tgtttatttt gtttacatgt gtgtacatgg tattaggtgg tagacatgtg
     1621 tgtgccacac tatctgtaga ggtcaaagga cagctctgtg gagacagttt gctcttttca
     1681 cctttagatg ggctttggag attgtcaggc ttgcacagga aacactttac ccactgagtc
     1741 ttctcactgt ctgtatttct atgataaaac actatgacca aaagcaactt gggaagaaca
     1801 ggataacttt atcttctact tccaggaagc agtctattac taaggaaagt cagggtagga
     1861 acctggaggc aagaactgat gatgaaggcc atggaggagt gctgcttaaa ggtttgctcc
     1921 atggcttgct cagcctgctt tcttatagtt gcccacattg ggatggatcc tcccacatca
     1981 atcatcagtc aggaaaatgc agcacaggcc aatctggtac aggtatcctg gctcctgccc
     2041 accagaaagc tgctatattg aacactttta ttctccacta acttctcttc tccagggaac
     2101 actttcttgt ccaatactga accattagca ccagtattcc tttgctaaaa tgagtaaagt
     2161 taagcttgat ggctataatc ccagcactga gagagagaga agcagaaggg tcagttagtt
     2221 cataactggt caggactaca tgagaccttg tttcaacaac aacctataaa tgtacctgtc
     2281 atttttagat ctttaatgca actctagaat ctaaattgct tgcagcaaga aatagcttta
     2341 tttattccaa aatggtaatg taacagggtt tttttgtttg tttgttttgt tttgtttttt
     2401 taagctgctc aagtagcatg gaactgtaat cccagaactg gttaggtaga ggcaggagaa
     2461 cccaaagttc aaggtcatct tggttatata acaagtttga ggctagccta cattataaga
     2521 gactctgttt caataaacac agacaaacag taaataaggt taaaataagg taactgtgca
     2581 ggtgctgagc tggcgccaag cagtcatagg ccatctgtca cccagcagtt ggccacagcc
     2641 tcatctttgt acagcttctt agtctggttt tggctcaaag gattcaagaa ttctccactt
     2701 tctctgttgc cttagaatga tgaactttgt attagaattt gtcctctctt cagcttcttg
     2761 gagctgtttt atgtcacttc ctaacaaggt aggcttgtct tttgttgttg ctagctatcc
     2821 taataggctt tatttttcat tctgtctaga cccccttttc tataaaatac aaatatccct
     2881 atagagtcga aaaggctttt ccccttttgg taaatgtggg ccatttgttc tactctatca
     2941 ctgcaatttt gggcatgctg gcaattaaca catcttaagt ttacagtccc gttacgatca
     3001 tgtgtctgtc gcatgagcta aagaaagaca aggttctgta gatgactgta gacatttaac
     3061 ttgagagggt acagtgcaga aggctggcta ccaggagaac gtataccaag aatttggaat
     3121 atgttcctta tccagggtcc ccatagacca gaccatctga attaagcaga ccaaaaagcc
     3181 acaaatagcc cagaaagtgt taactaactt gcattctcct tattcagtta gatagatgtg
     3241 ccatccagga tcccaggaat gtggattagg ttgagggtgt aggacagcat ccacctagca
     3301 agtacaaaaa ctcaaggtct gatcatctac acccaacctg ggaggcagtg ttaaattaga
     3361 gaccagcagt aatactattt tgaacaagtg agttaccaat gttaaagttt catacaggtt
     3421 ttgatgacag atgagacatc aaacactcca gaccaaggca aacatcagaa tttacctgag
     3481 atattttaag atcatagccc ctctgggcat taagagcttt tattcactgt tatagccaaa
     3541 agccctttaa gccaggaatt ctatgaatat ccttcatgga aaccccagag ttgttttttc
     3601 gagacagggt ttctctgtat agccctggct gtcctggaac tcactttgta gaccaggctg
     3661 gtctcgaact cagaaatcct cctgcctctg cctcctgagt gctgggatta aaggcgtgcg
     3721 ccaccacacc tggcttgtta tttctaattt taaactatta agaaaggaac agatttttac
     3781 taagcattta tacaattttg ttatagttcc atgaaaataa gaacacatac atatttccaa
     3841 aaaccttaaa aattttcttt aaatatgaac aacttgcaaa atgtaatatt ttagctgcaa
     3901 aacccagtaa gatttaaatt ttatgtgtat gagtgttttg cttgcattaa tatctacaac
     3961 acttctgctc ctagtgcctg cagagggtgc cggatcccct gaaagtggag gagctacaga
     4021 tggttttgag ctactacgtg ggtgctggga accaatcctg ggttctctag aatagctaag
     4081 tcattattcc atccccattt ctgaagcaat ttgtaactag acaaccttga gagtatccaa
     4141 atactcttag tttgttccat tgactatttg agacaattta agtctttggg ggtgggggct
     4201 ttaaaaggtg atttgtctat ggggttcaag agatctctgc ttatcttgaa catttgccta
     4261 gttgtctcac tagcttcaag cttgggagat tgtacacaga tcttatgtta ccaattttat
     4321 ctattatttc ccatttgaac aaatcaaact taaattctca ggactgccat aggtcttttt
     4381 cagccattca tggctgacaa gtatgttaaa tgagtccagt tacatgagtg gcaacagaaa
     4441 tagtctcatc agcatgggac tgtaggacag tacttccatt ttgctgacct tgtttgttac
     4501 tgttttggga aatggcctct tggtttagct gttgtcctgg tcatttcagt acatgtttct
     4561 gcactagttg tctgctcttt aggaactgaa tctatacagc agaacttctt ctgcctagtt
     4621 tttgactaca aggtatgata gaaaatttga ttctgggtgt gggacagtat tcaggcctga
     4681 gttttcagat ttgtcaaggc ctgtctcagc ctcctgagtg ctgagattac agacatgtgc
     4741 ctccacacat gcctcacttt tgtttatact cagcttttgc actgagttct atagaatgtg
     4801 tgtactgaga aagggtagga tagagatttc atggctattc tgctaaattc ttcacaggca
     4861 ctgcttattt gcttatcaga gatgcacatc ctgttaatat atactgggaa ctgacaattg
     4921 cctaagatca tgtcacttga gagtcataat gtaaatctac ttgaagccta catgactgaa
     4981 aatcctgatt tttttttttt agtctcttgg gccttcctct gcattcccag tgttctttgc
     5041 ttaactccct ttaatgcctg tctctctaca ttcgtctcca ctcctaattt tttccatggt
     5101 aatatgagct accattaatc ccgccttagg tttcaggcat gttccactca cattccaaca
     5161 aaagggtagc tgtgaacccc atgtaactga gttgcatgaa atatagaatg tcatgtttta
     5221 aaataaactt ataattctgt tgtaccatat ttacattctt tgggtatgcc taggcactct
     5281 ttcacattag attaaaaagg ttttcatgtt
//
