LOCUS       NM_001042499            2022 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RAB, member RAS oncogene family-like 3 (Rabl3), mRNA.
ACCESSION   NM_001042499
VERSION     NM_001042499.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Zhong,X., Su,L., Yang,Y., Nair-Gill,E., Tang,M., Anderton,P.,
            Li,X., Wang,J., Zhan,X., Tomchick,D.R., Brautigam,C.A.,
            Moresco,E.M.Y., Choi,J.H. and Beutler,B.
  TITLE     Genetic and structural studies of RABL3 reveal an essential role in
            lymphoid development and function
  JOURNAL   Proc Natl Acad Sci U S A 117 (15), 8563-8572 (2020)
   PUBMED   32220963
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 2022)
  AUTHORS   Powles,N., Babbs,C., Ficker,M., Schimmang,T. and Maconochie,M.
  TITLE     Identification and analysis of genes from the mouse otic vesicle
            and their association with developmental subprocesses through in
            situ hybridization
  JOURNAL   Dev Biol 268 (1), 24-38 (2004)
   PUBMED   15031102
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK016099.1 and AC154762.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050194.1, AK028195.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849378, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-983               AK016099.1         10-992
            984-2022            AC154762.2         86746-87784
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 26.39 cM"
     gene            1..2022
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="RAB, member RAS oncogene family-like 3"
                     /db_xref="GeneID:67657"
                     /db_xref="MGI:MGI:1914907"
     exon            1..67
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..732
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="RAB, member of RAS oncogene family-like 3"
                     /codon_start=1
                     /product="rab-like protein 3"
                     /protein_id="NP_001035964.1"
                     /db_xref="CCDS:CCDS37338.1"
                     /db_xref="GeneID:67657"
                     /db_xref="MGI:MGI:1914907"
                     /translation="MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVD
                     IRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKS
                     SQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEV
                     LIRTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVIEKRYFFREGNQIPG
                     FSDRKRFGGGALKNFHCD"
     exon            68..159
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            160..289
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            290..404
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            405..555
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            556..627
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            628..666
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            667..2022
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1870..1875
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1891
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="major polyA site"
     regulatory      1998..2003
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2022
                     /gene="Rabl3"
                     /gene_synonym="4930553C05Rik"
                     /note="major polyA site"
ORIGIN      
        1 cctcaaggaa atcgtggcaa gatggcgtcc ctggatcggg tgaaggttct ggtgttggga
       61 gactcaggtg ttgggaaatc ttcactcgtc catcttctgt gccacaatca agtgttagga
      121 aatccgtcat ggactgtggg ctgctcggtg gatatcagag ttcatgacta caaagaaggg
      181 acccctgaag agaagacata ctatatagaa ctatgggatg ttggaggctc tgtgggcagt
      241 gccagcagtg tgaaaagcac aagagcggtg ttctacaact ctgtaaacgg catcatttta
      301 gtacatgact taacaaataa gaagtcatct caaaacttat atcgctggtc attggaagtt
      361 ctcaatcggg atgcagttcc aaccggagtc ctggtgacaa atggggatta tgaccgagaa
      421 cagtttgctg ataaccaaat cccactgttg gtaataggga ctaaactgga ccagattcat
      481 gaaaccaagc gccatgaagt tttaatcagg actgctttcc tggctgagga cttcaatgct
      541 gaagagatta atttggattg cacaaaccca cggtcctcag ctgcaggctc ctccaatgct
      601 gtcaagctca gtagattttt tgataaggtt atagagaaga gatatttttt tagagaaggt
      661 aatcagattc cgggcttttc tgatcggaag aggtttggag gaggggcact gaagaacttc
      721 cactgtgact gagtggccct cagccctgga agagcaaggg aacagcagca gtgtccacag
      781 cttcctcttg ctgtgtaggg acattaactt ctcaggcttt gggaaaaaca tctcaaaatg
      841 ctacctcacc ctctcttgga aaattgaaag gaagcagcgg catggaaggt cctagctctg
      901 cccattctct gtatcctcac caccctgtcc ctgattatag cttatgtaaa agccttgtga
      961 cgacataaag gcttgtcaaa cccatgcagt aaagaactgg agacaagggc tgcagcgaag
     1021 gctgactctt acttggaacc agcgggtttt acaggcctgc gattttccca cacttgctgc
     1081 tgaaggctta attaagtact tcagaaacat atctgtgttg ttttacttcc tgaggggaaa
     1141 ggtcatgtta atcagccctg agttatccac cccaaaccat ccctgccatt ttaaaagaag
     1201 ccaaatggtg ttatttcatt ttctccatcc tcattacaca cagggatgcc taagaatagc
     1261 aaccccatct cctctgctct ctctgggaaa gggcttagtg tctgggaaga gcgatggact
     1321 aatagctgga gttaaataga aatacaaatt aataatacat ggcgaacaga ccagaagaga
     1381 agggtctgtg agactctaac agctcctctg ctccaaggtt gcagctgtcg gaaggctctt
     1441 tctgctttct gtttggaaag tgggtgaaat ctgagacctg tacaaggcca gtaagacaga
     1501 ttattgcctc tttggtggtt ctttttgttt tgttttgttt tgttttgttt tgttttgttt
     1561 tttttaattt tcttttccca gtttggttgg ttgttgttct gtttatttgt aaggaaatcc
     1621 aattcctgga atgtccctta atacgatgaa cagtaagcta agactattat ccttgtctta
     1681 acaatgtatt tatgagaagt caattacgtc ccagagtaac gaactcatat acattatgag
     1741 cccgtgtttg aggtttcatc atcacgctgc aacgtttttg gcggtggtgt gtatgtatat
     1801 gtttgcataa ctggttgtca ttgtttctta gcccatcttt tttgctggtt taatctcagt
     1861 tccttagttt ataaaattgg ttgccaaaaa acgactgtaa ttggctgctg tgttcaacac
     1921 cttgtttcca gatgctcctg tctgcagcgg cgccccgctt cctgctcccc gctccccgct
     1981 ccctggcttt gtacctaatt aaaaaatcat ggtatgaata ta
//
